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phylogenetic tree  (MEGA Inc)

 
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    MEGA Inc phylogenetic tree
    Phylogenetic Tree, supplied by MEGA Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mega6+program/mega+5+0+software/pm33075174-57-17-19
    Average 90 stars, based on 1 article reviews
    phylogenetic tree - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Construct:

    Article Title: PfGSTF2 endows resistance to quizalofop‐p‐ethyl in Polypogon fugax by GSH conjugation
    Article Snippet: A phylogenetic tree was constructed with 1000 bootstrap replicates using the MEGA 5.0 software (MEGA Inc., Englewood, NJ) between P. fugax GST2c genes and the wheat genome (Wang et al ., ).

    Article Title: Analysis of mitochondrial protein-coding genes of Antheraea assamensis: Muga silkworm of Assam.
    Article Snippet: Scientific editing by Yonggyun Kim.. Abstract To understand the synonymous codon usage pattern in mitochondrial genome of Antheraea assamensis, we analyzed the 13 mitochondrial protein‐coding genes of this species using a bioinformatic approach as no work was reported yet.. The nucleotide composition analysis suggested that the percentages of A, T, G,and C were 33.73, 46.39, 9.7 and 10.17, respectively and the overall GC content was 19.86, that is, lower than 50% and the genes were AT rich.

    Article Title: TaGST1 Gene and Its Regulatory Factor WRKY74 Mediate Copper Tolerance by Effecting Glutathione Accumulation in Wheat
    Article Snippet: The TaWRKY74 phylogenetic tree was constructed with the rice and Triticum WRKY proteins by using MEGA 5.0 software (MEGA Inc., USA).

    Article Title: WRKY74 regulates cadmium tolerance through glutathione-dependent pathway in wheat.
    Article Snippet: Cadmium (Cd) is a toxic heavy metal to plants and human health.. Ascorbate (ASA)-glutathione (GSH) synthesis pathway plays key roles in Cd detoxification, while its molecular regulatory mechanism remains largely unknown, especially in wheat.. Here, we found a WRKY transcription factor-TaWRKY74, and its function in wheat Cd stress is not clear in previous studies.

    Article Title: Dissecting nematode resistance regions in soybean revealed pleiotropic effect of soybean cyst and reniform nematode resistance genes.
    Article Snippet: The neighbor-joining model implemented in the MEGA6 (Tamura, Stecher, Peterson, Filipski, & Kumar, 2013; MEGA Inc.), as described previously (Patil et al., 2016), was used to construct sequence similarity trees.

    Article Title: PfGSTF2 endows resistance to quizalofop-p-ethyl in Polypogon fugax by GSH conjugation.
    Article Snippet: A phylogenetic tree was constructed with 1000 bootstrap replicates using the MEGA 5.0 software (MEGA Inc., Englewood, NJ) between P. fugax GST2c genes and the wheat genome (Wang et al., 2019).

    Article Title: Detoxification mechanism of herbicide in Polypogon fugax and its influence on rhizosphere enzyme activities.
    Article Snippet: A phylogenetic tree of CYP89A2 genes of different plants was built using MEGA 5.0 software (MEGA Inc., Englewood, NJ) with the maximum likelihood (ml) method with 1000 bootstrap replicates.

    Article Title: Functional analysis of the odorant receptor coreceptor in odor detection in Grapholita molesta (lepidoptera: Tortricidae).
    Article Snippet: Arch Insect Biochem Physiol.. 2021;e21837. wileyonlinelibrary.com/journal/arch © 2021 Wiley Periodicals LLC | 1 of 18 https://doi.org/10.1002/arch.21837 College of Life Science, Yan'an University, Yan'an, Shaanxi, China 2Key Laboratory of Plant Protection Resources & Pest Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China

    Software:

    Article Title: PfGSTF2 endows resistance to quizalofop‐p‐ethyl in Polypogon fugax by GSH conjugation
    Article Snippet: A phylogenetic tree was constructed with 1000 bootstrap replicates using the MEGA 5.0 software (MEGA Inc., Englewood, NJ) between P. fugax GST2c genes and the wheat genome (Wang et al ., ).

    Article Title: Analysis of mitochondrial protein-coding genes of Antheraea assamensis: Muga silkworm of Assam.
    Article Snippet: Scientific editing by Yonggyun Kim.. Abstract To understand the synonymous codon usage pattern in mitochondrial genome of Antheraea assamensis, we analyzed the 13 mitochondrial protein‐coding genes of this species using a bioinformatic approach as no work was reported yet.. The nucleotide composition analysis suggested that the percentages of A, T, G,and C were 33.73, 46.39, 9.7 and 10.17, respectively and the overall GC content was 19.86, that is, lower than 50% and the genes were AT rich.

    Article Title: TaGST1 Gene and Its Regulatory Factor WRKY74 Mediate Copper Tolerance by Effecting Glutathione Accumulation in Wheat
    Article Snippet: The TaWRKY74 phylogenetic tree was constructed with the rice and Triticum WRKY proteins by using MEGA 5.0 software (MEGA Inc., USA).

    Article Title: WRKY74 regulates cadmium tolerance through glutathione-dependent pathway in wheat.
    Article Snippet: Cadmium (Cd) is a toxic heavy metal to plants and human health.. Ascorbate (ASA)-glutathione (GSH) synthesis pathway plays key roles in Cd detoxification, while its molecular regulatory mechanism remains largely unknown, especially in wheat.. Here, we found a WRKY transcription factor-TaWRKY74, and its function in wheat Cd stress is not clear in previous studies.

    Article Title: Dissecting nematode resistance regions in soybean revealed pleiotropic effect of soybean cyst and reniform nematode resistance genes.
    Article Snippet: The neighbor-joining model implemented in the MEGA6 (Tamura, Stecher, Peterson, Filipski, & Kumar, 2013; MEGA Inc.), as described previously (Patil et al., 2016), was used to construct sequence similarity trees.

    Article Title: PfGSTF2 endows resistance to quizalofop-p-ethyl in Polypogon fugax by GSH conjugation.
    Article Snippet: A phylogenetic tree was constructed with 1000 bootstrap replicates using the MEGA 5.0 software (MEGA Inc., Englewood, NJ) between P. fugax GST2c genes and the wheat genome (Wang et al., 2019).

    Article Title: Detoxification mechanism of herbicide in Polypogon fugax and its influence on rhizosphere enzyme activities.
    Article Snippet: A phylogenetic tree of CYP89A2 genes of different plants was built using MEGA 5.0 software (MEGA Inc., Englewood, NJ) with the maximum likelihood (ml) method with 1000 bootstrap replicates.

    Article Title: Functional analysis of the odorant receptor coreceptor in odor detection in Grapholita molesta (lepidoptera: Tortricidae).
    Article Snippet: Arch Insect Biochem Physiol.. 2021;e21837. wileyonlinelibrary.com/journal/arch © 2021 Wiley Periodicals LLC | 1 of 18 https://doi.org/10.1002/arch.21837 College of Life Science, Yan'an University, Yan'an, Shaanxi, China 2Key Laboratory of Plant Protection Resources & Pest Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China

    Sequencing:

    Article Title: PfGSTF2 endows resistance to quizalofop‐p‐ethyl in Polypogon fugax by GSH conjugation
    Article Snippet: A phylogenetic tree was constructed with 1000 bootstrap replicates using the MEGA 5.0 software (MEGA Inc., Englewood, NJ) between P. fugax GST2c genes and the wheat genome (Wang et al ., ).

    Article Title: Analysis of mitochondrial protein-coding genes of Antheraea assamensis: Muga silkworm of Assam.
    Article Snippet: Scientific editing by Yonggyun Kim.. Abstract To understand the synonymous codon usage pattern in mitochondrial genome of Antheraea assamensis, we analyzed the 13 mitochondrial protein‐coding genes of this species using a bioinformatic approach as no work was reported yet.. The nucleotide composition analysis suggested that the percentages of A, T, G,and C were 33.73, 46.39, 9.7 and 10.17, respectively and the overall GC content was 19.86, that is, lower than 50% and the genes were AT rich.

    Article Title: TaGST1 Gene and Its Regulatory Factor WRKY74 Mediate Copper Tolerance by Effecting Glutathione Accumulation in Wheat
    Article Snippet: The TaWRKY74 phylogenetic tree was constructed with the rice and Triticum WRKY proteins by using MEGA 5.0 software (MEGA Inc., USA).

    Article Title: WRKY74 regulates cadmium tolerance through glutathione-dependent pathway in wheat.
    Article Snippet: Cadmium (Cd) is a toxic heavy metal to plants and human health.. Ascorbate (ASA)-glutathione (GSH) synthesis pathway plays key roles in Cd detoxification, while its molecular regulatory mechanism remains largely unknown, especially in wheat.. Here, we found a WRKY transcription factor-TaWRKY74, and its function in wheat Cd stress is not clear in previous studies.

    Article Title: Dissecting nematode resistance regions in soybean revealed pleiotropic effect of soybean cyst and reniform nematode resistance genes.
    Article Snippet: The neighbor-joining model implemented in the MEGA6 (Tamura, Stecher, Peterson, Filipski, & Kumar, 2013; MEGA Inc.), as described previously (Patil et al., 2016), was used to construct sequence similarity trees.

    Article Title: PfGSTF2 endows resistance to quizalofop-p-ethyl in Polypogon fugax by GSH conjugation.
    Article Snippet: A phylogenetic tree was constructed with 1000 bootstrap replicates using the MEGA 5.0 software (MEGA Inc., Englewood, NJ) between P. fugax GST2c genes and the wheat genome (Wang et al., 2019).

    Article Title: Detoxification mechanism of herbicide in Polypogon fugax and its influence on rhizosphere enzyme activities.
    Article Snippet: A phylogenetic tree of CYP89A2 genes of different plants was built using MEGA 5.0 software (MEGA Inc., Englewood, NJ) with the maximum likelihood (ml) method with 1000 bootstrap replicates.

    Article Title: Functional analysis of the odorant receptor coreceptor in odor detection in Grapholita molesta (lepidoptera: Tortricidae).
    Article Snippet: Arch Insect Biochem Physiol.. 2021;e21837. wileyonlinelibrary.com/journal/arch © 2021 Wiley Periodicals LLC | 1 of 18 https://doi.org/10.1002/arch.21837 College of Life Science, Yan'an University, Yan'an, Shaanxi, China 2Key Laboratory of Plant Protection Resources & Pest Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China



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    The EVR1 gene family in Arabidopsis. A, Phylogenetic analysis of EVR1 and EVR1L proteins from Arabidopsis, Glycine max, Oryza sativa, Zea mays, Physcomitrella patens, Chlamydomonas reinhardtii, and Saccharomyces cerevisiae. Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the <t>MEGA6</t> program (Tamura et al., 2013). B, Gene structure analysis of EVR1 and EVR1L1. Gene models were drawn as in Fig. 2A. The numbers of coding nucleotides in each exon were marked. C, An alignment of amino acid sequences of EVR1 and EVR1L1. The alignment was generated by the software ClustalW2 (Larkin et al., 2007).
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    Image Search Results


    The EVR1 gene family in Arabidopsis. A, Phylogenetic analysis of EVR1 and EVR1L proteins from Arabidopsis, Glycine max, Oryza sativa, Zea mays, Physcomitrella patens, Chlamydomonas reinhardtii, and Saccharomyces cerevisiae. Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the MEGA6 program (Tamura et al., 2013). B, Gene structure analysis of EVR1 and EVR1L1. Gene models were drawn as in Fig. 2A. The numbers of coding nucleotides in each exon were marked. C, An alignment of amino acid sequences of EVR1 and EVR1L1. The alignment was generated by the software ClustalW2 (Larkin et al., 2007).

    Journal: Plant Physiology

    Article Title: Balance between Cytosolic and Chloroplast Translation Affects Leaf Variegation 1

    doi: 10.1104/pp.17.00673

    Figure Lengend Snippet: The EVR1 gene family in Arabidopsis. A, Phylogenetic analysis of EVR1 and EVR1L proteins from Arabidopsis, Glycine max, Oryza sativa, Zea mays, Physcomitrella patens, Chlamydomonas reinhardtii, and Saccharomyces cerevisiae. Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the MEGA6 program (Tamura et al., 2013). B, Gene structure analysis of EVR1 and EVR1L1. Gene models were drawn as in Fig. 2A. The numbers of coding nucleotides in each exon were marked. C, An alignment of amino acid sequences of EVR1 and EVR1L1. The alignment was generated by the software ClustalW2 (Larkin et al., 2007).

    Article Snippet: Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the MEGA6 program ( Tamura et al., 2013 ).

    Techniques: Construct, Generated, Software