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matlab dbscan function  (MathWorks Inc)


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    Structured Review

    MathWorks Inc matlab dbscan function
    Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the <t>DBSCAN</t> algorithm with minimum 17 <t>neighbors</t> <t>(MinPts)</t> and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.
    Matlab Dbscan Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/matlab+dbscan+function/pmc10393769-230-3-2
    Average 90 stars, based on 1 article reviews
    matlab dbscan function - by Bioz Stars, 2026-10
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    Images

    1) Product Images from "Flat clathrin lattices are linked to metastatic potential in colorectal cancer"

    Article Title: Flat clathrin lattices are linked to metastatic potential in colorectal cancer

    Journal: iScience

    doi: 10.1016/j.isci.2023.107327

    Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the DBSCAN algorithm with minimum 17 neighbors (MinPts) and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.
    Figure Legend Snippet: Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the DBSCAN algorithm with minimum 17 neighbors (MinPts) and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.

    Techniques Used:


    Figure Legend Snippet:

    Techniques Used: Recombinant, Software, Imaging, Microscopy, Fluorescence

    Related Articles

    other:

    Article Title: Mechanisms for dysregulation of excitatory-inhibitory balance underlying allodynia in dorsal horn neural subcircuits.
    Article Snippet: To apply density-based clustering to the data, we use Matlab’s dbscan function.

    Article Title: Biosonar Responsivity Sets the Stage for the Terminal Buzz
    Article Snippet: A clustering algorithm (DBSCAN) [ ] was used to examine the density and distribution of data points in the velocity-call rate domain–implemented using dbscan function in Matlab.

    Article Title: An Inverse FEM for Structural Health Monitoring of a Containership: Sensor Network Optimization for Accurate Displacement, Strain, and Internal Force Reconstruction.
    Article Snippet: Clustering of constant gradient areas: For each surface where the distribution of grad was calculated, the areas with elements characterized by a constant grad value are identified using MatLab’s dbscan function [46].

    Article Title: An Inverse FEM for Structural Health Monitoring of a Containership: Sensor Network Optimization for Accurate Displacement, Strain, and Internal Force Reconstruction
    Article Snippet: Clustering of constant gradient areas: For each surface where the distribution of g r a d t o t was calculated, the areas with elements characterized by a constant g r a d t o t value are identified using MatLab’s dbscan function [ ].

    Article Title: An Inverse FEM for Structural Health Monitoring of a Containership: Sensor Network Optimization for Accurate Displacement, Strain, and Internal Force Reconstruction.
    Article Snippet: Clustering of constant gradient areas: For each surface where the distribution of gradtot was calculated, the areas with elements characterized by a constant gradtot value are identified using MatLab’s dbscan function [46].

    Article Title: Smart Lattice Light Sheet Microscopy for imaging rare and complex cellular events
    Article Snippet: To generate the box plot of medians of the velocity distribution, we calculated the median velocity of all kinetochores within each cell across all time points for a given mitotic stage. . iv) Outlier kinetochore detection: Because there can occasionally be extra cells present within a live-cell movie in addition to the mitotic cell of interest, we first identified the kinetochores corresponding only to the mitotic cell of interest by applying the DBSCAN function in Matlab with a search radius of 50 pixels (5.4 μm) and a minimum cluster size of 50 points.

    Article Title: Smart Lattice Light Sheet Microscopy for imaging rare and complex cellular events
    Article Snippet: Because there can occasionally be extra cells present within a live-cell movie in addition to the mitotic cell of interest, we first identified the kinetochores corresponding only to the mitotic cell of interest by applying the DBSCAN function in Matlab with a search radius of 50 pixels (5.4 μm) and a minimum cluster size of 50 points.

    Modification:

    Article Title: Supporting Information for Differential nanoscale organization of excitatory synapses onto excitatory vs inhibitory neurons
    Article Snippet: .. Nanocluster detection relied on the dbscan function in MATLAB, which after testing several cluster detection methods was most consistently able to identify Munc13-1 NCs in their heterogeneous distributions while also being easily modified with a factor to identify nanostructure in the relatively more homogenous PSD-95 distribution. ..



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    MathWorks Inc matlab dbscan function
    Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the <t>DBSCAN</t> algorithm with minimum 17 <t>neighbors</t> <t>(MinPts)</t> and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.
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    Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the <t>DBSCAN</t> algorithm with minimum 17 <t>neighbors</t> <t>(MinPts)</t> and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.
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    Image Search Results


    Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the DBSCAN algorithm with minimum 17 neighbors (MinPts) and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.

    Journal: iScience

    Article Title: Flat clathrin lattices are linked to metastatic potential in colorectal cancer

    doi: 10.1016/j.isci.2023.107327

    Figure Lengend Snippet: Cluster identification and classification workflow illustrated in a metastatic KM12L4a cell Individual localizations (ii) that make up the PALM-TIRF image (i) were clustered using the DBSCAN algorithm with minimum 17 neighbors (MinPts) and search radius (ε) 0.55. Retaining clusters with ≥50 localizations resulted in identification of individual clathrin clusters (iii). The designed cluster classification model (iv and v) classifies these as either a classical CCS (blue, indicated as CCP) or an alternative FCL (pink) based on 5 cluster-specific parameters (cluster area, number of localizations NrPts, eccentricity, perimeter, and the distance to the nearest neighboring cluster MinDistance) and a global threshold. Scale bars 5 μm, except scale bars of enlargements 1 μm.

    Article Snippet: Then, the MATLAB DBSCAN function was executed for a minimum of 17 neighbors (MinPts) within a search radius (ε) of 0.55.

    Techniques:

    Journal: iScience

    Article Title: Flat clathrin lattices are linked to metastatic potential in colorectal cancer

    doi: 10.1016/j.isci.2023.107327

    Figure Lengend Snippet:

    Article Snippet: Then, the MATLAB DBSCAN function was executed for a minimum of 17 neighbors (MinPts) within a search radius (ε) of 0.55.

    Techniques: Recombinant, Software, Imaging, Microscopy, Fluorescence