torrent mapping alignment program (tmap) within the torrent suite software version 5.10 (Thermo Fisher)
Thermo Fisher is a verified supplier 
Thermo Fisher manufactures this product 
90
Structured Review
Thermo Fisher
torrent mapping alignment program (tmap) within the torrent suite software version 5.10
Torrent Mapping Alignment Program (Tmap) Within The Torrent Suite Software Version 5.10, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/map+aligner+software/torrent+mapping+alignment+program/pmc08254966-129-8-13
Average 90 stars, based on 1 article reviews
Torrent Mapping Alignment Program (Tmap) Within The Torrent Suite Software Version 5.10, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/map+aligner+software/torrent+mapping+alignment+program/pmc08254966-129-8-13
Average 90 stars, based on 1 article reviews
torrent mapping alignment program (tmap) within the torrent suite software version 5.10 - by Bioz Stars,
2026-09
90/100 stars
Images
Related Articles
Infection:Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: TVC v.5.0.3 (Thermo Fisher Scientific) was used for variant calling with the following parameters: snp_min_coverage = 100; snp_min_cov_each_strand = 4; snp_min_variant_score = 6; snp_min_allele_freq = 0.02; snp_strand_bias = 0.95; snp_strand_bias_pval = 0.01. .. Supplementary Information Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Maisa Pinheiro1, Nicolas Wentzensen1, Michael Dean1,2, Meredith Yeager1,2,3, Zigui Chen4, Amulya Shastry1,2, Joseph F. Boland1,2, Sara Bass1,2, Laurie Burdett1,2, Thomas Lorey5, Sambit Mishra1,2, Philip E. Castle1,6, Mark Schiffman1, Robert D. Burk7,8, Bin Zhu1, Lisa Mirabello1* Supplementary Methods Mutation calling quality control Amplicon panel sequence reads were mapped to hg19 using Mutagenesis:Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: TVC v.5.0.3 (Thermo Fisher Scientific) was used for variant calling with the following parameters: snp_min_coverage = 100; snp_min_cov_each_strand = 4; snp_min_variant_score = 6; snp_min_allele_freq = 0.02; snp_strand_bias = 0.95; snp_strand_bias_pval = 0.01. .. Supplementary Information Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Maisa Pinheiro1, Nicolas Wentzensen1, Michael Dean1,2, Meredith Yeager1,2,3, Zigui Chen4, Amulya Shastry1,2, Joseph F. Boland1,2, Sara Bass1,2, Laurie Burdett1,2, Thomas Lorey5, Sambit Mishra1,2, Philip E. Castle1,6, Mark Schiffman1, Robert D. Burk7,8, Bin Zhu1, Lisa Mirabello1* Supplementary Methods Mutation calling quality control Amplicon panel sequence reads were mapped to hg19 using Control:Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: TVC v.5.0.3 (Thermo Fisher Scientific) was used for variant calling with the following parameters: snp_min_coverage = 100; snp_min_cov_each_strand = 4; snp_min_variant_score = 6; snp_min_allele_freq = 0.02; snp_strand_bias = 0.95; snp_strand_bias_pval = 0.01. .. Supplementary Information Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Maisa Pinheiro1, Nicolas Wentzensen1, Michael Dean1,2, Meredith Yeager1,2,3, Zigui Chen4, Amulya Shastry1,2, Joseph F. Boland1,2, Sara Bass1,2, Laurie Burdett1,2, Thomas Lorey5, Sambit Mishra1,2, Philip E. Castle1,6, Mark Schiffman1, Robert D. Burk7,8, Bin Zhu1, Lisa Mirabello1* Supplementary Methods Mutation calling quality control Amplicon panel sequence reads were mapped to hg19 using Amplification:Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: TVC v.5.0.3 (Thermo Fisher Scientific) was used for variant calling with the following parameters: snp_min_coverage = 100; snp_min_cov_each_strand = 4; snp_min_variant_score = 6; snp_min_allele_freq = 0.02; snp_strand_bias = 0.95; snp_strand_bias_pval = 0.01. .. Supplementary Information Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Maisa Pinheiro1, Nicolas Wentzensen1, Michael Dean1,2, Meredith Yeager1,2,3, Zigui Chen4, Amulya Shastry1,2, Joseph F. Boland1,2, Sara Bass1,2, Laurie Burdett1,2, Thomas Lorey5, Sambit Mishra1,2, Philip E. Castle1,6, Mark Schiffman1, Robert D. Burk7,8, Bin Zhu1, Lisa Mirabello1* Supplementary Methods Mutation calling quality control Amplicon panel sequence reads were mapped to hg19 using Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: .. Response 5: We have added the parameters underlying read quality assessment, cutoffs, filters, ect, to the Supplemental Material as suggested, and added in the main methods section to refer there for those details, as follows: “Amplicon panel sequence reads were mapped to hg19 using Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: .. Amplicon panel sequence reads were mapped to hg19 using Sequencing:Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: TVC v.5.0.3 (Thermo Fisher Scientific) was used for variant calling with the following parameters: snp_min_coverage = 100; snp_min_cov_each_strand = 4; snp_min_variant_score = 6; snp_min_allele_freq = 0.02; snp_strand_bias = 0.95; snp_strand_bias_pval = 0.01. .. Supplementary Information Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Maisa Pinheiro1, Nicolas Wentzensen1, Michael Dean1,2, Meredith Yeager1,2,3, Zigui Chen4, Amulya Shastry1,2, Joseph F. Boland1,2, Sara Bass1,2, Laurie Burdett1,2, Thomas Lorey5, Sambit Mishra1,2, Philip E. Castle1,6, Mark Schiffman1, Robert D. Burk7,8, Bin Zhu1, Lisa Mirabello1* Supplementary Methods Mutation calling quality control Amplicon panel sequence reads were mapped to hg19 using Article Title: Expression of PVRL4, a molecular target for cancer treatment, is transcriptionally regulated by FOS. Article Snippet: The libraries were sequenced using an Ion Proton system with an Ion PI Hi‐Q Sequencing 200 kit and Ion PI Chip v3 (Thermo Fisher Scientific, Inc.). .. The sequencing reads were aligned to hg19_AmpliSeq_Transcriptome_ERCC_v1 using the Article Title: Expression of PVRL4, a molecular target for cancer treatment, is transcriptionally regulated by FOS Article Snippet: The libraries were sequenced using an Ion Proton system with an Ion PI Hi-Q Sequencing 200 kit and Ion PI Chip v3 (Thermo Fisher Scientific, Inc.). .. The sequencing reads were aligned to hg19_AmpliSeq_Transcriptome_ERCC_v1 using the Article Title: Molecular diagnosis of Alpha-sarcoglycanopathies by NGS in seven Moroccan families and report of two novel variants. Article Snippet: Background Limb-girdle muscular dystrophies constitute a heterogeneous group of neuromuscular diseases, both clinically and genetically.. Limb-girdle muscular dystrophy by alpha-sarcoglycan deficiency or LGMD R3 α-sarcoglycan-related is a subtype of the autosomal recessive sarcoglycanopathies caused by variants in the alpha-sarcoglycan gene (SGCA ) at 17q21.33.. It appears in childhood by progressive weakness of pelvic and/or scapular girdle muscles and calf hypertrophy, with a wide range of clinical interand intra-familial clinical variability. Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: .. Response 5: We have added the parameters underlying read quality assessment, cutoffs, filters, ect, to the Supplemental Material as suggested, and added in the main methods section to refer there for those details, as follows: “Amplicon panel sequence reads were mapped to hg19 using Article Title: Overlapping neurological phenotypes in two extended consanguineous families with novel variants in the CNTNAP1 and ADGRG1 genes. Article Snippet: Department of Biological Sciences, International Islamic University, Islamabad, Pakistan Department of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan Medical Research, RILD Wellcome Wolfson Centre (Level 4), Royal Devon and Exeter NHS Foundation Trust, Exeter, Devon, UK Hafeez Institute of Medical Sciences, Islamabad, Pakistan Medical Genomics Research Department, King Abdullah International Medical Research Center (KAIMRC), King Saud Bin Abdulaziz University for Health Sciences, Ministry of National Guard Health Affairs (MNGH), Riyadh, Saudi Arabia Article Title: Somatic mutations in 3929 HPV positive cervical cells associated with infection outcome and HPV type Article Snippet: .. Amplicon panel sequence reads were mapped to hg19 using Generated:Article Title: Expression of PVRL4, a molecular target for cancer treatment, is transcriptionally regulated by FOS. Article Snippet: The libraries were sequenced using an Ion Proton system with an Ion PI Hi‐Q Sequencing 200 kit and Ion PI Chip v3 (Thermo Fisher Scientific, Inc.). .. The sequencing reads were aligned to hg19_AmpliSeq_Transcriptome_ERCC_v1 using the Article Title: Expression of PVRL4, a molecular target for cancer treatment, is transcriptionally regulated by FOS Article Snippet: The libraries were sequenced using an Ion Proton system with an Ion PI Hi-Q Sequencing 200 kit and Ion PI Chip v3 (Thermo Fisher Scientific, Inc.). .. The sequencing reads were aligned to hg19_AmpliSeq_Transcriptome_ERCC_v1 using the Article Title: Molecular diagnosis of Alpha-sarcoglycanopathies by NGS in seven Moroccan families and report of two novel variants. Article Snippet: Background Limb-girdle muscular dystrophies constitute a heterogeneous group of neuromuscular diseases, both clinically and genetically.. Limb-girdle muscular dystrophy by alpha-sarcoglycan deficiency or LGMD R3 α-sarcoglycan-related is a subtype of the autosomal recessive sarcoglycanopathies caused by variants in the alpha-sarcoglycan gene (SGCA ) at 17q21.33.. It appears in childhood by progressive weakness of pelvic and/or scapular girdle muscles and calf hypertrophy, with a wide range of clinical interand intra-familial clinical variability. Software:Article Title: Expression of PVRL4, a molecular target for cancer treatment, is transcriptionally regulated by FOS. Article Snippet: The libraries were sequenced using an Ion Proton system with an Ion PI Hi‐Q Sequencing 200 kit and Ion PI Chip v3 (Thermo Fisher Scientific, Inc.). .. The sequencing reads were aligned to hg19_AmpliSeq_Transcriptome_ERCC_v1 using the Article Title: Expression of PVRL4, a molecular target for cancer treatment, is transcriptionally regulated by FOS Article Snippet: The libraries were sequenced using an Ion Proton system with an Ion PI Hi-Q Sequencing 200 kit and Ion PI Chip v3 (Thermo Fisher Scientific, Inc.). .. The sequencing reads were aligned to hg19_AmpliSeq_Transcriptome_ERCC_v1 using the Article Title: Molecular diagnosis of Alpha-sarcoglycanopathies by NGS in seven Moroccan families and report of two novel variants. Article Snippet: Background Limb-girdle muscular dystrophies constitute a heterogeneous group of neuromuscular diseases, both clinically and genetically.. Limb-girdle muscular dystrophy by alpha-sarcoglycan deficiency or LGMD R3 α-sarcoglycan-related is a subtype of the autosomal recessive sarcoglycanopathies caused by variants in the alpha-sarcoglycan gene (SGCA ) at 17q21.33.. It appears in childhood by progressive weakness of pelvic and/or scapular girdle muscles and calf hypertrophy, with a wide range of clinical interand intra-familial clinical variability. Variant Assay:Article Title: Overlapping neurological phenotypes in two extended consanguineous families with novel variants in the CNTNAP1 and ADGRG1 genes. Article Snippet: Department of Biological Sciences, International Islamic University, Islamabad, Pakistan Department of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan Medical Research, RILD Wellcome Wolfson Centre (Level 4), Royal Devon and Exeter NHS Foundation Trust, Exeter, Devon, UK Hafeez Institute of Medical Sciences, Islamabad, Pakistan Medical Genomics Research Department, King Abdullah International Medical Research Center (KAIMRC), King Saud Bin Abdulaziz University for Health Sciences, Ministry of National Guard Health Affairs (MNGH), Riyadh, Saudi Arabia other:Article Title: Development and validation of next-generation sequencing panel for personalized Helicobacter pylori eradication treatment targeting multiple species Article Snippet: The |