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ob cell lines cohorts rna extraction cdna synthesis quality control mirna analysis data analysis mirneasy mini kit  (Qiagen)


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    Structured Review

    Qiagen ob cell lines cohorts rna extraction cdna synthesis quality control mirna analysis data analysis mirneasy mini kit
    Fig. 2. Unsupervised hierarchical cluster analysis. The expression value (log2) for each detectable <t>miRNA</t> (Cq < 37) was used to determine the clustering of the samples. Red: primary OS samples; yellow: OS cell lines; blue: OB cell lines.
    Ob Cell Lines Cohorts Rna Extraction Cdna Synthesis Quality Control Mirna Analysis Data Analysis Mirneasy Mini Kit, supplied by Qiagen, used in various techniques. Bioz Stars score: 99/100, based on 22777 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/line+data+analysis/miRNeasy+Mini+Kit/pm29120535-85-61-78
    Average 99 stars, based on 22777 article reviews
    ob cell lines cohorts rna extraction cdna synthesis quality control mirna analysis data analysis mirneasy mini kit - by Bioz Stars, 2026-11
    99/100 stars

    Images

    1) Product Images from "miRNA profiling identifies deregulated miRNAs associated with osteosarcoma development and time to metastasis in two large cohorts."

    Article Title: miRNA profiling identifies deregulated miRNAs associated with osteosarcoma development and time to metastasis in two large cohorts.

    Journal: Molecular oncology

    doi: 10.1002/1878-0261.12154

    Fig. 2. Unsupervised hierarchical cluster analysis. The expression value (log2) for each detectable miRNA (Cq < 37) was used to determine the clustering of the samples. Red: primary OS samples; yellow: OS cell lines; blue: OB cell lines.
    Figure Legend Snippet: Fig. 2. Unsupervised hierarchical cluster analysis. The expression value (log2) for each detectable miRNA (Cq < 37) was used to determine the clustering of the samples. Red: primary OS samples; yellow: OS cell lines; blue: OB cell lines.

    Techniques Used: Expressing

    Fig. 4. Network of validated target genes. Network of validated target genes associated with the terms ‘Cell Death and Survival, Cancer, Hematological System Development and Function’. The relation of 29 validated target genes (miRWalk2.0) assembled in a network associated with 11 miRNAs altered in OS in this study. Eight genes were downregulated and 21 upregulated. Red: downregulated; blue: upregulated. Gray lines: association between genes; Red lines: association between gene and miRNA; continuous line: direct association; dashed line: indirect association.
    Figure Legend Snippet: Fig. 4. Network of validated target genes. Network of validated target genes associated with the terms ‘Cell Death and Survival, Cancer, Hematological System Development and Function’. The relation of 29 validated target genes (miRWalk2.0) assembled in a network associated with 11 miRNAs altered in OS in this study. Eight genes were downregulated and 21 upregulated. Red: downregulated; blue: upregulated. Gray lines: association between genes; Red lines: association between gene and miRNA; continuous line: direct association; dashed line: indirect association.

    Techniques Used:

    Related Articles

    Polymerase Chain Reaction:

    Article Title: ZBTB1 Regulates Glycolysis and Chemotherapy Resistance Through Interacting with c-Myc in Triple Negative Breast Cancer.
    Article Snippet: .. Co-immunoprecipitated RNAs were extracted by a miRNeasy Mini Kit (Qiagen, Hilden, Germany) and then subjected to realtime PCR to detect the enrichment of target RNAs bound to ZBTB1. ..

    Article Title: Effect of high-sucrose intake on the salivary glands of growing rats: histological analysis and assessment of gene and protein expression.
    Article Snippet: 1 The Nippon Dental University Graduate School of Life Dentistry at Niigata, Course of Clinical Science, Field of Oral and Maxillofacial Growth and Development, Pediatric Oral Behavior Science, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 951-8580, Japan 2 Department of Biochemistry, The Nippon Dental University School of Life Dentistry at Niigata, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 951-8580, Japan 3 Department of Pediatric Dentistry, The Nippon Dental University School of Life Dentistry at Niigata, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 9518580, Japan Abstract Excessive sugar intake contributes to noncommunicable diseases, including dental caries.. According to the Developmental Origins of Health and Disease (DOHaD) theory, early-life nutrition influences organ development and future disease susceptibility.. This study examined the impact of high-sucrose intake during the growth period on salivary gland development in rats and its potential influence on dental caries after growth.

    Concentration Assay:

    Article Title: Effect of high-sucrose intake on the salivary glands of growing rats: histological analysis and assessment of gene and protein expression.
    Article Snippet: 1 The Nippon Dental University Graduate School of Life Dentistry at Niigata, Course of Clinical Science, Field of Oral and Maxillofacial Growth and Development, Pediatric Oral Behavior Science, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 951-8580, Japan 2 Department of Biochemistry, The Nippon Dental University School of Life Dentistry at Niigata, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 951-8580, Japan 3 Department of Pediatric Dentistry, The Nippon Dental University School of Life Dentistry at Niigata, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 9518580, Japan Abstract Excessive sugar intake contributes to noncommunicable diseases, including dental caries.. According to the Developmental Origins of Health and Disease (DOHaD) theory, early-life nutrition influences organ development and future disease susceptibility.. This study examined the impact of high-sucrose intake during the growth period on salivary gland development in rats and its potential influence on dental caries after growth.

    Spectrophotometry:

    Article Title: Effect of high-sucrose intake on the salivary glands of growing rats: histological analysis and assessment of gene and protein expression.
    Article Snippet: 1 The Nippon Dental University Graduate School of Life Dentistry at Niigata, Course of Clinical Science, Field of Oral and Maxillofacial Growth and Development, Pediatric Oral Behavior Science, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 951-8580, Japan 2 Department of Biochemistry, The Nippon Dental University School of Life Dentistry at Niigata, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 951-8580, Japan 3 Department of Pediatric Dentistry, The Nippon Dental University School of Life Dentistry at Niigata, The Nippon Dental University, 1-8 Hamaura-cho, Chuo-ku, Niigata 9518580, Japan Abstract Excessive sugar intake contributes to noncommunicable diseases, including dental caries.. According to the Developmental Origins of Health and Disease (DOHaD) theory, early-life nutrition influences organ development and future disease susceptibility.. This study examined the impact of high-sucrose intake during the growth period on salivary gland development in rats and its potential influence on dental caries after growth.

    Tissue:

    Article Title: Neuron‐Derived Vesicular circMagi1 Restrains Vascular Repair After Ischemic Stroke by Promoting TRIM65‐Mediated ANXA2 Degradation
    Article Snippet: .. Total RNA was extracted from freshly collected brain tissue or purified EV pellets using the miRNeasy Mini Kit (217004, QIAGEN). .. RNA concentration and purity were assessed using a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA), with purity evaluated from the A260/A280 ratio.

    Article Title: Cabergoline Suppresses Postpartum Breast Cancer by Enhancing Mammary Gland Involution in Brca1-Mutant Mice and Is Associated with Reduced Risk in Younger Women
    Article Snippet: 1133 aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -26-0187/3838556/cd-26-0187.pdf by guest on 19 O ctober 2026 46 Detection was via enhanced chemiluminescence (ECL, #170-5061, Bio-Rad) and 1134 imaging on an ImageQuant LAS 500 (GE Healthcare Life Sciences) .. 1135 RNA extraction and library preparation for sequencing 1136 RNA was extracted from epithelial-enriched tissue fragments using the Qiagen miRNeasy 1137 Mini Kit. .. Quality and integrity assessments involved agarose gel electrophoresis, 1138 Nanodrop, and an Agilent 5400 bioanalyzer.

    Article Title: Distinct Expression Patterns of miR-21-5p and miR-21-3p in Oral Epithelial Dysplasia and Early Oral Squamous Cell Carcinoma.
    Article Snippet: .. Total RNA, including microRNA, was isolated from frozen tissue samples using the miRNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions. .. For each sample, RNA concentration and purity were determined spectrophotometrically using a NanoDrop One Spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA).

    Purification:

    Article Title: Neuron‐Derived Vesicular circMagi1 Restrains Vascular Repair After Ischemic Stroke by Promoting TRIM65‐Mediated ANXA2 Degradation
    Article Snippet: .. Total RNA was extracted from freshly collected brain tissue or purified EV pellets using the miRNeasy Mini Kit (217004, QIAGEN). .. RNA concentration and purity were assessed using a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA), with purity evaluated from the A260/A280 ratio.

    Profiling:

    Article Title: microRNA and Regulatory Networks of Human Macrophage During Leishmania major In Vitro Infection.
    Article Snippet: .. To enable the simultaneous profiling of mRNA and miR from each single sample, total RNA was extracted using the miRNeasy Mini Kit (Qiagen, Hilden, Germany). .. Cells were harvested and immediately lysed with 700 μL of QIAzol Lysis Reagent (Qiagen, Hilden, Germany), and the RNA extraction proceeded following the manufacturer’s instructions.

    RNA Extraction:

    Article Title: Cabergoline Suppresses Postpartum Breast Cancer by Enhancing Mammary Gland Involution in Brca1-Mutant Mice and Is Associated with Reduced Risk in Younger Women
    Article Snippet: 1133 aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -26-0187/3838556/cd-26-0187.pdf by guest on 19 O ctober 2026 46 Detection was via enhanced chemiluminescence (ECL, #170-5061, Bio-Rad) and 1134 imaging on an ImageQuant LAS 500 (GE Healthcare Life Sciences) .. 1135 RNA extraction and library preparation for sequencing 1136 RNA was extracted from epithelial-enriched tissue fragments using the Qiagen miRNeasy 1137 Mini Kit. .. Quality and integrity assessments involved agarose gel electrophoresis, 1138 Nanodrop, and an Agilent 5400 bioanalyzer.

    Sequencing:

    Article Title: Cabergoline Suppresses Postpartum Breast Cancer by Enhancing Mammary Gland Involution in Brca1-Mutant Mice and Is Associated with Reduced Risk in Younger Women
    Article Snippet: 1133 aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -26-0187/3838556/cd-26-0187.pdf by guest on 19 O ctober 2026 46 Detection was via enhanced chemiluminescence (ECL, #170-5061, Bio-Rad) and 1134 imaging on an ImageQuant LAS 500 (GE Healthcare Life Sciences) .. 1135 RNA extraction and library preparation for sequencing 1136 RNA was extracted from epithelial-enriched tissue fragments using the Qiagen miRNeasy 1137 Mini Kit. .. Quality and integrity assessments involved agarose gel electrophoresis, 1138 Nanodrop, and an Agilent 5400 bioanalyzer.

    Isolation:

    Article Title: The histone methyltransferase complex subunit RBBP5 serves as a central epigenetic regulator of proteostasis dynamics.
    Article Snippet: .. Total RNA was isolated from mouse liver with miRNeasy Mini Kit (Qiagen) per the manufacturer’s instructions. .. RNA was assessed for quality using an Agilent TapeStation 4150/Fragment Analyzer 5300 and RNA concentration was quantified on a Qubit FLEX fluorometer.

    Article Title: Distinct Expression Patterns of miR-21-5p and miR-21-3p in Oral Epithelial Dysplasia and Early Oral Squamous Cell Carcinoma.
    Article Snippet: .. Total RNA, including microRNA, was isolated from frozen tissue samples using the miRNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions. .. For each sample, RNA concentration and purity were determined spectrophotometrically using a NanoDrop One Spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA).



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    Fig. 2. Unsupervised hierarchical cluster analysis. The expression value (log2) for each detectable <t>miRNA</t> (Cq < 37) was used to determine the clustering of the samples. Red: primary OS samples; yellow: OS cell lines; blue: OB cell lines.
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    Fig. 2. Unsupervised hierarchical cluster analysis. The expression value (log2) for each detectable miRNA (Cq < 37) was used to determine the clustering of the samples. Red: primary OS samples; yellow: OS cell lines; blue: OB cell lines.

    Journal: Molecular oncology

    Article Title: miRNA profiling identifies deregulated miRNAs associated with osteosarcoma development and time to metastasis in two large cohorts.

    doi: 10.1002/1878-0261.12154

    Figure Lengend Snippet: Fig. 2. Unsupervised hierarchical cluster analysis. The expression value (log2) for each detectable miRNA (Cq < 37) was used to determine the clustering of the samples. Red: primary OS samples; yellow: OS cell lines; blue: OB cell lines.

    Article Snippet: See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense Discovery Cohort 23 OS samples (Fresh frozen) Normal control: 3 OB cell lines Validation Cohort 78 OS samples (FFPE) Normal control: 3 OB cell lines Cohorts RNA extraction cDNA synthesis Quality control miRNA analysis Data analysis miRNeasy Mini Kit (Qiagen) miRNAeasy FFPE Kit (Qiagen) 50 ng RNA Universal cDNA Synthesis Kit II (Exiqon) 65 ng RNA Universal cDNA Synthesis Kit II (Exiqon) QC of cDNA Expression of: miR-103; miR-191-5p; miR-423 (Cq<32) UniSp6 (Spike-in) (Cq:16-18) QC of cDNA Expression of: miR-191-5p; miR-423-5p (Cq<30); UniSP4, UniSp5, UniSp6 (Spike-ins) 752 miRNAs analysed microRNA Ready-to-Use PCR, Human Panel I+II v2 (Exiqon) cDNA diluted 1:100 33 miRNAs analysed Pick&Mix microRNA PCR Panels (Exiqon) cDNA diluted 1:20 Analysis in GenEx Software (MultiD) Normalization: Mean global expression Analysis in GenEx Software (MultiD) Normalization: 5 reference miRs 78 miRs diff. expressed (OS samples vs OB cell lines) 5 reference miRs identified 29 miRs diff. expressed (OS samples vs OB cell lines) 33 miRs diff. expressed Exclusion of miRs with no expr. diff. btw.

    Techniques: Expressing

    Fig. 4. Network of validated target genes. Network of validated target genes associated with the terms ‘Cell Death and Survival, Cancer, Hematological System Development and Function’. The relation of 29 validated target genes (miRWalk2.0) assembled in a network associated with 11 miRNAs altered in OS in this study. Eight genes were downregulated and 21 upregulated. Red: downregulated; blue: upregulated. Gray lines: association between genes; Red lines: association between gene and miRNA; continuous line: direct association; dashed line: indirect association.

    Journal: Molecular oncology

    Article Title: miRNA profiling identifies deregulated miRNAs associated with osteosarcoma development and time to metastasis in two large cohorts.

    doi: 10.1002/1878-0261.12154

    Figure Lengend Snippet: Fig. 4. Network of validated target genes. Network of validated target genes associated with the terms ‘Cell Death and Survival, Cancer, Hematological System Development and Function’. The relation of 29 validated target genes (miRWalk2.0) assembled in a network associated with 11 miRNAs altered in OS in this study. Eight genes were downregulated and 21 upregulated. Red: downregulated; blue: upregulated. Gray lines: association between genes; Red lines: association between gene and miRNA; continuous line: direct association; dashed line: indirect association.

    Article Snippet: See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense Discovery Cohort 23 OS samples (Fresh frozen) Normal control: 3 OB cell lines Validation Cohort 78 OS samples (FFPE) Normal control: 3 OB cell lines Cohorts RNA extraction cDNA synthesis Quality control miRNA analysis Data analysis miRNeasy Mini Kit (Qiagen) miRNAeasy FFPE Kit (Qiagen) 50 ng RNA Universal cDNA Synthesis Kit II (Exiqon) 65 ng RNA Universal cDNA Synthesis Kit II (Exiqon) QC of cDNA Expression of: miR-103; miR-191-5p; miR-423 (Cq<32) UniSp6 (Spike-in) (Cq:16-18) QC of cDNA Expression of: miR-191-5p; miR-423-5p (Cq<30); UniSP4, UniSp5, UniSp6 (Spike-ins) 752 miRNAs analysed microRNA Ready-to-Use PCR, Human Panel I+II v2 (Exiqon) cDNA diluted 1:100 33 miRNAs analysed Pick&Mix microRNA PCR Panels (Exiqon) cDNA diluted 1:20 Analysis in GenEx Software (MultiD) Normalization: Mean global expression Analysis in GenEx Software (MultiD) Normalization: 5 reference miRs 78 miRs diff. expressed (OS samples vs OB cell lines) 5 reference miRs identified 29 miRs diff. expressed (OS samples vs OB cell lines) 33 miRs diff. expressed Exclusion of miRs with no expr. diff. btw.

    Techniques: