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whole human genome oligo microarray 44 k cdna array  (Agilent technologies)


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    Structured Review

    Agilent technologies whole human genome oligo microarray 44 k cdna array
    Whole Human Genome Oligo Microarray 44 K Cdna Array, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/human+cdna+microarray/pmc01779497-69-70-72
    Average 90 stars, based on 1 article reviews
    whole human genome oligo microarray 44 k cdna array - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Control:

    Article Title: Identification of lipid droplet-associated proteins in the formation of macrophage-derived foam cells using microarrays.
    Article Snippet: Agilent hybridization and analysis. .. Total RNA from foam cells and macrophages (control group) was processed and hybridized to Agilent Whole Human Genome Oligo Microarray 44 k cDNA array following the manufacturer's recommendations. .. Cell intensity files were analyzed using the Rosetta Resolver Gene Expression Data Analysis System, v3.2. (Agilent Technologies).

    Microarray:

    Article Title: Identification of lipid droplet-associated proteins in the formation of macrophage-derived foam cells using microarrays.
    Article Snippet: Agilent hybridization and analysis. .. Total RNA from foam cells and macrophages (control group) was processed and hybridized to Agilent Whole Human Genome Oligo Microarray 44 k cDNA array following the manufacturer's recommendations. .. Cell intensity files were analyzed using the Rosetta Resolver Gene Expression Data Analysis System, v3.2. (Agilent Technologies).

    Article Title: Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
    Article Snippet: .. The same total RNA pools were hybridised onto a 20 k cDNA microarray (20 k brk, constructed at The Breakthrough Breast Cancer Research Centre, Institute of Cancer Research, London, UK containing 19,391 sequence-validated IMAGE clones), Affymetrix Human Genome U133 Plus 2.0 GeneChip (Affymetrix, Inc., Santa Clara, CA, USA), CodeLinkTM Human Whole Genome Bioarray (GE, Healthcare, formerly Amersham Biosciences, Chandler, AZ, USA) and Agilent Whole Human Genome Oligo Microarray 44 k cDNA array (Agilent Technologies, Palo Alto, CA, USA). ..

    Isolation:

    Article Title: The Xenoestrogen Bisphenol A Inhibits Postembryonic Vertebrate Development by Antagonizing Gene Regulation by Thyroid Hormone
    Article Snippet: .. RNA was isolated and subjected to cDNA array (slides AMADID 013665; Agilent, Santa Clara, CA) analysis by using a two-color reference design system as described ( 63 , 64 ) (also see supplemental Fig. S1, published as supplemental data on The Endocrine Society’s Journals Online web site at http://endo.endojournals.org). ..

    Generated:

    Article Title: Prognostic and Predictive Value of a Malignancy-Risk Gene Signature in Early-Stage Non-Small Cell Lung Cancer
    Article Snippet: .. Because the dataset was generated from an Agilent cDNA array, we used gene symbols to identify the malignancy-risk genes for this dataset (116 probe sets for 87 genes). .. The {"type":"entrez-geo","attrs":{"text":"GSE14814","term_id":"14814"}} GSE14814 dataset (Affymetrix 133 A chip) was extracted from the JBR.10, a randomized controlled trial with two cohorts: Patients who received ACT (n = 71) vs observation alone (n = 62).

    Knockdown:

    Article Title: 2011 ASPHO Abstracts
    Article Snippet: Background: Glioblastoma multiforme (GBM) is a common and extremely aggressive malignant brain tumor of childhood.. GBM tumors are profoundly chemoresistent and highly migratory, with few successful treatment options; the molecular basis for this is poorly understood.. Our laboratory has previously established that Mer receptor tyrosine kinase (RTK) and the closely related Axl RTK are highly overexpressed in GBM patient tumors and cell lines.

    Gene Expression:

    Article Title: 2011 ASPHO Abstracts
    Article Snippet: Background: Glioblastoma multiforme (GBM) is a common and extremely aggressive malignant brain tumor of childhood.. GBM tumors are profoundly chemoresistent and highly migratory, with few successful treatment options; the molecular basis for this is poorly understood.. Our laboratory has previously established that Mer receptor tyrosine kinase (RTK) and the closely related Axl RTK are highly overexpressed in GBM patient tumors and cell lines.

    Construct:

    Article Title: Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
    Article Snippet: .. The same total RNA pools were hybridised onto a 20 k cDNA microarray (20 k brk, constructed at The Breakthrough Breast Cancer Research Centre, Institute of Cancer Research, London, UK containing 19,391 sequence-validated IMAGE clones), Affymetrix Human Genome U133 Plus 2.0 GeneChip (Affymetrix, Inc., Santa Clara, CA, USA), CodeLinkTM Human Whole Genome Bioarray (GE, Healthcare, formerly Amersham Biosciences, Chandler, AZ, USA) and Agilent Whole Human Genome Oligo Microarray 44 k cDNA array (Agilent Technologies, Palo Alto, CA, USA). ..

    Sequencing:

    Article Title: Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
    Article Snippet: .. The same total RNA pools were hybridised onto a 20 k cDNA microarray (20 k brk, constructed at The Breakthrough Breast Cancer Research Centre, Institute of Cancer Research, London, UK containing 19,391 sequence-validated IMAGE clones), Affymetrix Human Genome U133 Plus 2.0 GeneChip (Affymetrix, Inc., Santa Clara, CA, USA), CodeLinkTM Human Whole Genome Bioarray (GE, Healthcare, formerly Amersham Biosciences, Chandler, AZ, USA) and Agilent Whole Human Genome Oligo Microarray 44 k cDNA array (Agilent Technologies, Palo Alto, CA, USA). ..

    Clone Assay:

    Article Title: Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
    Article Snippet: .. The same total RNA pools were hybridised onto a 20 k cDNA microarray (20 k brk, constructed at The Breakthrough Breast Cancer Research Centre, Institute of Cancer Research, London, UK containing 19,391 sequence-validated IMAGE clones), Affymetrix Human Genome U133 Plus 2.0 GeneChip (Affymetrix, Inc., Santa Clara, CA, USA), CodeLinkTM Human Whole Genome Bioarray (GE, Healthcare, formerly Amersham Biosciences, Chandler, AZ, USA) and Agilent Whole Human Genome Oligo Microarray 44 k cDNA array (Agilent Technologies, Palo Alto, CA, USA). ..



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    Image Search Results


    Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA  microarray  dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA microarray dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Article Snippet: In this study, purified total RNAs of both the SW480/DR and SW480/DS cells were analyzed using Agilent SurePrint G3 Human Gene Expression v3 8x60k format cDNA microarray and processed in the Agilent GeneSpring GX v14.9.1 software.

    Techniques: Microarray, Software

    Top ten downregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA  microarray  dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: Top ten downregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA microarray dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Article Snippet: In this study, purified total RNAs of both the SW480/DR and SW480/DS cells were analyzed using Agilent SurePrint G3 Human Gene Expression v3 8x60k format cDNA microarray and processed in the Agilent GeneSpring GX v14.9.1 software.

    Techniques: Microarray, Software

    Difference in lncRNA and mRNA fold-changes between the cDNA microarray and in-house RT-qPCR experiments. Data shown are from three independent experiments (in triplicates) with calculated SD values to represent error bars and their statistical analyses were conducted using one-way ANOVA.

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: Difference in lncRNA and mRNA fold-changes between the cDNA microarray and in-house RT-qPCR experiments. Data shown are from three independent experiments (in triplicates) with calculated SD values to represent error bars and their statistical analyses were conducted using one-way ANOVA.

    Article Snippet: In this study, purified total RNAs of both the SW480/DR and SW480/DS cells were analyzed using Agilent SurePrint G3 Human Gene Expression v3 8x60k format cDNA microarray and processed in the Agilent GeneSpring GX v14.9.1 software.

    Techniques: Microarray, Quantitative RT-PCR

    ( A ) LncRNA-mRNA interaction network was constructed based on the ten selected candidate lncRNAs from the cDNA microarray dataset. The resulting mRNA interactions were predicted using the “rtool” database with −20 kcal as the minimum energy threshold and were filtered to show only mRNAs that were also dysregulated in the dataset. Data were visualized using Cytoscape v3.8.2. (Pink diamond = candidate lncRNA, blue circle = predicted putative mRNA targets). ( B ) A total of nine mRNAs were identified as both responsible in the “regulated exocytosis” hit as well as highly likely to be regulated by the candidate lncRNAs listed in ( A ). Data were visualized using Cytoscape v3.8.2. (pink diamond = candidate regulator lncRNA, blue circle = mRNA predicted involved in the biological process).

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: ( A ) LncRNA-mRNA interaction network was constructed based on the ten selected candidate lncRNAs from the cDNA microarray dataset. The resulting mRNA interactions were predicted using the “rtool” database with −20 kcal as the minimum energy threshold and were filtered to show only mRNAs that were also dysregulated in the dataset. Data were visualized using Cytoscape v3.8.2. (Pink diamond = candidate lncRNA, blue circle = predicted putative mRNA targets). ( B ) A total of nine mRNAs were identified as both responsible in the “regulated exocytosis” hit as well as highly likely to be regulated by the candidate lncRNAs listed in ( A ). Data were visualized using Cytoscape v3.8.2. (pink diamond = candidate regulator lncRNA, blue circle = mRNA predicted involved in the biological process).

    Article Snippet: In this study, purified total RNAs of both the SW480/DR and SW480/DS cells were analyzed using Agilent SurePrint G3 Human Gene Expression v3 8x60k format cDNA microarray and processed in the Agilent GeneSpring GX v14.9.1 software.

    Techniques: Construct, Microarray

    Comparisons of real-time quantitative reverse transcription PCR,  microarrays,  and RNA-sequencing and their applications in hepatocellular carcinoma recurrence

    Journal: World Journal of Gastroenterology

    Article Title: Transcriptome analysis creates a new era of precision medicine for managing recurrent hepatocellular carcinoma

    doi: 10.3748/wjg.v29.i5.780

    Figure Lengend Snippet: Comparisons of real-time quantitative reverse transcription PCR, microarrays, and RNA-sequencing and their applications in hepatocellular carcinoma recurrence

    Article Snippet: The surfacing of commercial platforms, such as Human UniGene Set RZPD 1 clone set for cDNA microarrays and Affymetrix Human Genome U95Av2 array for oligonucleotide arrays, have made the technology for both types of arrays widely accessible[ ].

    Techniques: Isolation, cDNA Library Assay, Amplification, Labeling, Fluorescence, Hybridization, Sequencing, High Throughput Screening Assay