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high-resolution microarray scanner  (Agilent technologies)


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    Structured Review

    Agilent technologies high-resolution microarray scanner
    The 11 genes were detected in the <t>microarray</t> analysis and in the human dataset. A correlation between FCs of genes. B heatmap with hierarchical clustering of FCs of the 11 genes commonly detected in the murine neurospheres and AD patients’ tissues
    High Resolution Microarray Scanner, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/high+microarray+scanner/pmc11184896-52-18-21
    Average 90 stars, based on 1 article reviews
    high-resolution microarray scanner - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Bradykinin promotes immune responses in differentiated embryonic neurospheres carrying APP swe and PS1 dE9 mutations"

    Article Title: Bradykinin promotes immune responses in differentiated embryonic neurospheres carrying APP swe and PS1 dE9 mutations

    Journal: Cell & Bioscience

    doi: 10.1186/s13578-024-01251-3

    The 11 genes were detected in the microarray analysis and in the human dataset. A correlation between FCs of genes. B heatmap with hierarchical clustering of FCs of the 11 genes commonly detected in the murine neurospheres and AD patients’ tissues
    Figure Legend Snippet: The 11 genes were detected in the microarray analysis and in the human dataset. A correlation between FCs of genes. B heatmap with hierarchical clustering of FCs of the 11 genes commonly detected in the murine neurospheres and AD patients’ tissues

    Techniques Used: Microarray

    Related Articles

    Microarray:

    Article Title: LncRNA microarray profiling identifies novel circulating lncRNAs in hidradenitis suppurativa
    Article Snippet: Prior to hybridization to the chip (Human lncFinder RT2 lncRNA PCR Array; cat. no. 330721; Qiagen Inc.) RT 2 SYBR Green Mastermix for RT-qPCR (Qiagen, Inc.) was used. .. Microarrays were scanned using an Agilent microarray scanner (Agilent Technologies, Inc.), directed by GenePix Pro 6.0 software (Axon Instruments; Molecular Devices, LLC). .. Scanned images (in the .tiff format) were imported into Agilent Feature Extraction software v.12.2 (Agilent Technologies, Inc.) for grid alignment and expression data analysis.

    Article Title: Modulation of alpha synuclein expression
    Article Snippet: .. Slides were scanned using a high-resolution microarray scanner (Agilent) using lasers to excite the Cy3 and Cy5 fluorochromes. ..

    Article Title: Modulation of alpha synuclein expression
    Article Snippet: TABLE 12 Antisense oligonucleotide levels in Thy1-aSYN mice compared to the PBS control (arbitrary units) Cortex Striatum Cortex Striatum Oligo ID (rostral) (rostral) (caudal) (caudal) 387985 22607 25225 29899 34625 489352 34604 30315 32535 36067 489356 26615 22943 26549 24441 489357 25219 25095 27427 30458 TABLE 13 Percent reduction in SNCA levels in Thy1- aSYN mice compared to the PBS control Cortex Striatum Cortex Striatum Oligo ID (rostral) (rostral) (caudal) (caudal) 387985 17 23 37 16 489352 14 12 28 10 489356 0 0 0 0 489357 0 0 21 0 Evaluation of Toxicity Due to Antisense Oligonucleotide Administration in Brain Sections The rostral and caudal regions of striatal and cortical tissues of the brain were also individually stained with immunofluorescent antibodies rabbit anti-GFAP (Dako Inc, CA) or anti-NeuN (Chemicon Inc). .. Images of the stained sections were acquired using a microarray scanner (Agilent Technologies, CA). ..

    Article Title: Circ-0044539 promotes lymph node metastasis of hepatocellular carcinoma through exosomal-miR-29a-3p.
    Article Snippet: Then, RNAs were amplified and labeled with the Low Input Quick Amp WT Labeling Kit (Agilent Technologies, US). .. These labeled RNAs were hybridized using a Gene Expression Hybridization Kit (Agilent Technologies, US), and scanned by an Agilent Microarray Scanner (Agilent Technologies, US). ..

    Article Title: In vitro/In vivo Evaluations of Hydroxyapatite Nanoparticles with Different Geometry
    Article Snippet: The total RNA was amplified using a low-input rapid amperometry labeling kit, then labeled with a chromogenic label, and hybridized to the Agilent whole human genome microarrays 4 × 44K. .. The microarrays were scanned using an Agilent microarray scanner. .. Raw data was normalized using the quantile algorithm and analyzed using Gene Spring software 11.0 (Agilent Technologies).

    Article Title: ATR/Chk1 interacting lncRNA modulates DNA damage response to induce breast cancer chemoresistance.
    Article Snippet: Based on the manufacturer's protocols, the labeled cRNA was performed hybridizing with Agilent Gene Expression Hybridization Kit (#5188–5242, Agilent). .. The data were scanned with Agilent Microarray Scanner and processed with Agilent Feature Extraction Software (Agilent). ..

    Article Title: A novel selective NLRP3 inhibitor shows disease-modifying potential in animal models of Parkinson's disease.
    Article Snippet: Pathological activation of the Nod-like receptor family pyrin domain containing protein 3 (NLRP3) inflammasome signaling underlies many autoimmune and neuroinflammatory conditions.. Here we report that, a rationally designed, novel, orally active, selective NLRP3

    Article Title: Molecular Characteristics of Aberrant Gene Mutations and Expression Profiles Induced by Benzo(a)pyrene in Hepatocellular Carcinoma Cells
    Article Snippet: .. Scanning of the slides was carried out on an Agilent Microarray Scanner at a 3 μm resolution, employing the green dye channel, with the photomultiplier tube (PMT) set at 100% and a 20-bit depth setting. ..

    Software:

    Article Title: LncRNA microarray profiling identifies novel circulating lncRNAs in hidradenitis suppurativa
    Article Snippet: Prior to hybridization to the chip (Human lncFinder RT2 lncRNA PCR Array; cat. no. 330721; Qiagen Inc.) RT 2 SYBR Green Mastermix for RT-qPCR (Qiagen, Inc.) was used. .. Microarrays were scanned using an Agilent microarray scanner (Agilent Technologies, Inc.), directed by GenePix Pro 6.0 software (Axon Instruments; Molecular Devices, LLC). .. Scanned images (in the .tiff format) were imported into Agilent Feature Extraction software v.12.2 (Agilent Technologies, Inc.) for grid alignment and expression data analysis.

    Article Title: ATR/Chk1 interacting lncRNA modulates DNA damage response to induce breast cancer chemoresistance.
    Article Snippet: Based on the manufacturer's protocols, the labeled cRNA was performed hybridizing with Agilent Gene Expression Hybridization Kit (#5188–5242, Agilent). .. The data were scanned with Agilent Microarray Scanner and processed with Agilent Feature Extraction Software (Agilent). ..

    Staining:

    Article Title: Modulation of alpha synuclein expression
    Article Snippet: TABLE 12 Antisense oligonucleotide levels in Thy1-aSYN mice compared to the PBS control (arbitrary units) Cortex Striatum Cortex Striatum Oligo ID (rostral) (rostral) (caudal) (caudal) 387985 22607 25225 29899 34625 489352 34604 30315 32535 36067 489356 26615 22943 26549 24441 489357 25219 25095 27427 30458 TABLE 13 Percent reduction in SNCA levels in Thy1- aSYN mice compared to the PBS control Cortex Striatum Cortex Striatum Oligo ID (rostral) (rostral) (caudal) (caudal) 387985 17 23 37 16 489352 14 12 28 10 489356 0 0 0 0 489357 0 0 21 0 Evaluation of Toxicity Due to Antisense Oligonucleotide Administration in Brain Sections The rostral and caudal regions of striatal and cortical tissues of the brain were also individually stained with immunofluorescent antibodies rabbit anti-GFAP (Dako Inc, CA) or anti-NeuN (Chemicon Inc). .. Images of the stained sections were acquired using a microarray scanner (Agilent Technologies, CA). ..

    Labeling:

    Article Title: Circ-0044539 promotes lymph node metastasis of hepatocellular carcinoma through exosomal-miR-29a-3p.
    Article Snippet: Then, RNAs were amplified and labeled with the Low Input Quick Amp WT Labeling Kit (Agilent Technologies, US). .. These labeled RNAs were hybridized using a Gene Expression Hybridization Kit (Agilent Technologies, US), and scanned by an Agilent Microarray Scanner (Agilent Technologies, US). ..

    Gene Expression:

    Article Title: Circ-0044539 promotes lymph node metastasis of hepatocellular carcinoma through exosomal-miR-29a-3p.
    Article Snippet: Then, RNAs were amplified and labeled with the Low Input Quick Amp WT Labeling Kit (Agilent Technologies, US). .. These labeled RNAs were hybridized using a Gene Expression Hybridization Kit (Agilent Technologies, US), and scanned by an Agilent Microarray Scanner (Agilent Technologies, US). ..

    Hybridization:

    Article Title: Circ-0044539 promotes lymph node metastasis of hepatocellular carcinoma through exosomal-miR-29a-3p.
    Article Snippet: Then, RNAs were amplified and labeled with the Low Input Quick Amp WT Labeling Kit (Agilent Technologies, US). .. These labeled RNAs were hybridized using a Gene Expression Hybridization Kit (Agilent Technologies, US), and scanned by an Agilent Microarray Scanner (Agilent Technologies, US). ..

    Extraction:

    Article Title: ATR/Chk1 interacting lncRNA modulates DNA damage response to induce breast cancer chemoresistance.
    Article Snippet: Based on the manufacturer's protocols, the labeled cRNA was performed hybridizing with Agilent Gene Expression Hybridization Kit (#5188–5242, Agilent). .. The data were scanned with Agilent Microarray Scanner and processed with Agilent Feature Extraction Software (Agilent). ..



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    Image Search Results


    Flow chart of microarray data analysis. The agilent single color microarray platform was used having more than 58,000 transcripts and further data processing was done using agilent GeneSpring software followed by pathway analysis using GSEA database. Numbers in parentheses illustrates number of pathways enriched in each category using GSEA database. DEGs-Differentially expressed genes, ANOVA-Analysis of variance, BP-Biological pathway, CC-Cellular component, MF-Molecular function.

    Journal: bioRxiv

    Article Title: Synovial fluid transcriptome dynamics in osteoarthritis progression: Implications in pathogenesis

    doi: 10.1101/2024.06.24.600143

    Figure Lengend Snippet: Flow chart of microarray data analysis. The agilent single color microarray platform was used having more than 58,000 transcripts and further data processing was done using agilent GeneSpring software followed by pathway analysis using GSEA database. Numbers in parentheses illustrates number of pathways enriched in each category using GSEA database. DEGs-Differentially expressed genes, ANOVA-Analysis of variance, BP-Biological pathway, CC-Cellular component, MF-Molecular function.

    Article Snippet: Following hybridization, the array slides were washed and scanned with an Agilent SureScan High-Resolution DNA Microarray Scanner.

    Techniques: Microarray, Software

    The 11 genes were detected in the microarray analysis and in the human dataset. A correlation between FCs of genes. B heatmap with hierarchical clustering of FCs of the 11 genes commonly detected in the murine neurospheres and AD patients’ tissues

    Journal: Cell & Bioscience

    Article Title: Bradykinin promotes immune responses in differentiated embryonic neurospheres carrying APP swe and PS1 dE9 mutations

    doi: 10.1186/s13578-024-01251-3

    Figure Lengend Snippet: The 11 genes were detected in the microarray analysis and in the human dataset. A correlation between FCs of genes. B heatmap with hierarchical clustering of FCs of the 11 genes commonly detected in the murine neurospheres and AD patients’ tissues

    Article Snippet: The arrays were then washed as described on Agilent SSPE wash protocol v. 2.1 and scanned with a High-Resolution Microarray Scanner (Agilent Technologies).

    Techniques: Microarray