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trusight rapid  (Illumina Inc)


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    Structured Review

    Illumina Inc trusight rapid
    Figure 4 Pipeline analysis for targeted NGS of multiple inherited cancer syndromes using the <t>TruSight</t> Cancer panel. In our analysis pipeline, .fastq files are used for alignment and variant calling in Isaac Enrichment, Burrows-Wheeler Aligner (BWA) Enrichment, and NextGENe software, and .vcf files are then imported to GeneticistAssistant for variant filtering. Supervised analysis of filtered variants will allow the identification of disease-associated variants and/or of pathogenic variants associated with cancer predisposing syndromes outside the clinical context (incidental finding), with both being supported (if needed) by visual inspection of .bam files in Golden Helix GenomeBrowse (GB). Variants called because <t>of</t> <t>sequencing</t> errors are discarded on visual inspection of .bam files in Golden Helix GB. 1000G, 1000 Genomes Project; ACMG, American College of Med- ical Genetics and Genomics; Alt.var.freq., percentage of reads with alter- native allele; CDS, coding sequence; EVS, Exome Variant Server; ExAC, Exome Aggregation Consortium; In-house freq., variant frequency among all of the samples in our in-house database; MAF, minor allele frequency.
    Trusight Rapid, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 96/100, based on 82 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/fc/TruSight+Rapid+Capture/pm28529006-32-12-16
    Average 96 stars, based on 82 article reviews
    trusight rapid - by Bioz Stars, 2026-10
    96/100 stars

    Images

    1) Product Images from "Validation of a Next-Generation Sequencing Pipeline for the Molecular Diagnosis of Multiple Inherited Cancer Predisposing Syndromes."

    Article Title: Validation of a Next-Generation Sequencing Pipeline for the Molecular Diagnosis of Multiple Inherited Cancer Predisposing Syndromes.

    Journal: The Journal of molecular diagnostics : JMD

    doi: 10.1016/j.jmoldx.2017.05.001

    Figure 4 Pipeline analysis for targeted NGS of multiple inherited cancer syndromes using the TruSight Cancer panel. In our analysis pipeline, .fastq files are used for alignment and variant calling in Isaac Enrichment, Burrows-Wheeler Aligner (BWA) Enrichment, and NextGENe software, and .vcf files are then imported to GeneticistAssistant for variant filtering. Supervised analysis of filtered variants will allow the identification of disease-associated variants and/or of pathogenic variants associated with cancer predisposing syndromes outside the clinical context (incidental finding), with both being supported (if needed) by visual inspection of .bam files in Golden Helix GenomeBrowse (GB). Variants called because of sequencing errors are discarded on visual inspection of .bam files in Golden Helix GB. 1000G, 1000 Genomes Project; ACMG, American College of Med- ical Genetics and Genomics; Alt.var.freq., percentage of reads with alter- native allele; CDS, coding sequence; EVS, Exome Variant Server; ExAC, Exome Aggregation Consortium; In-house freq., variant frequency among all of the samples in our in-house database; MAF, minor allele frequency.
    Figure Legend Snippet: Figure 4 Pipeline analysis for targeted NGS of multiple inherited cancer syndromes using the TruSight Cancer panel. In our analysis pipeline, .fastq files are used for alignment and variant calling in Isaac Enrichment, Burrows-Wheeler Aligner (BWA) Enrichment, and NextGENe software, and .vcf files are then imported to GeneticistAssistant for variant filtering. Supervised analysis of filtered variants will allow the identification of disease-associated variants and/or of pathogenic variants associated with cancer predisposing syndromes outside the clinical context (incidental finding), with both being supported (if needed) by visual inspection of .bam files in Golden Helix GenomeBrowse (GB). Variants called because of sequencing errors are discarded on visual inspection of .bam files in Golden Helix GB. 1000G, 1000 Genomes Project; ACMG, American College of Med- ical Genetics and Genomics; Alt.var.freq., percentage of reads with alter- native allele; CDS, coding sequence; EVS, Exome Variant Server; ExAC, Exome Aggregation Consortium; In-house freq., variant frequency among all of the samples in our in-house database; MAF, minor allele frequency.

    Techniques Used: Variant Assay, Software, Sequencing

    Related Articles

    Sequencing:

    Article Title: Detecting monogenic obesity: a systematic exome-wide workup of over 500 individuals
    Article Snippet: Sequencing was performed on Illumina NovaSeq 6000 (TWIST, TWIST 2.0), BGISEQ-500 (BGI), or an Illumina NextSeq- or HighSeq platform (Nextera, Agilent). .. The remaining 15.3% of patients ( n = 81) received genetic diagnostics based on the TruSight One Sequencing Panel (4,813 genes, Supplementary Table ), using the TruSight Rapid Capture Kit and Illumina NextSeq550. ..

    Article Title: Detecting monogenic obesity: a systematic exome-wide workup of over 500 individuals.
    Article Snippet: Sequencing was performed on Illumina NovaSeq 6000 (TWIST, TWIST 2.0), BGISEQ-500 (BGI), or an Illumina NextSeq- or HighSeq platform (Nextera, Agilent). .. The remaining 15.3% of patients (n= 81) received genetic diagnostics based on the TruSight One Sequencing Panel (4,813 genes, Supplementary Table 1), using the TruSight Rapid Capture Kit and Illumina NextSeq550. ..

    Article Title: Prevalence and clinical impact of germline pathogenic variants in breast cancer: a descriptive large single-center study
    Article Snippet: DNA were extracted from peripheral blood samples using the Magnapure 96 system (Roche, Indianapolis, IN). .. Next-generation sequencing (NGS) libraries were prepared using the TruSight Rapid Capture Kit and Hereditary Cancer Panel (Illumina, San Diego, CA), with sequencing carried out on the MiSeq platform. ..

    Article Title: Methods for identification of samples
    Article Snippet: .. Different capturing methods, assays, kits are for example, but not limited to: TruSight sequencing panels (Illumina), Nextera Rapid Capture kits (Illumina), TargetSeqTM Exome enrichment (Thermo Fisher Scientific), HaloPlexTM enrichment (Agilent Technologies), SureSelect Target enrichment (Agilent Technologies), SeqCap EZ enrichment (Roche NimbleGen), xGEN® Target capture (Integrated DNA Technologies). ..

    Article Title: Prevalence and clinical impact of germline pathogenic variants in breast cancer: a descriptive large single-center study.
    Article Snippet: DNA were extracted from peripheral blood samples using the Magnapure 96 system (Roche, Indianapolis, IN). .. Nextgeneration sequencing (NGS) libraries were prepared using the TruSight Rapid Capture Kit and Hereditary Cancer Panel (Illumina, San Diego, CA), with sequencing carried out on the MiSeq platform. ..

    Article Title: The Relationship of the Pathogenic Variant rs721048 in the Intron of the EHBP1 Gene with the Development of Prostate Cancer and Colorectal Cancer in the Kazakh Population.
    Article Snippet: Libraries from the obtained DNA were prepared using the Illumina DNA Prep kit. .. Enrichment was performed using the TruSight Rapid Capture Kit (Illumina, San Diego, CA, USA) with the TruSight Cancer Sequencing Panel (Illumina, USA). .. The concentration of the obtained DNA libraries was determined using a Qubit 2.0 fluorometer (Invitrogen, Carlsbad, CA, USA), and quality control was conducted using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA, USA).

    other:

    Article Title: Keratin 19 as a prognostic marker and contributing factor of metastasis and chemoresistance in high-grade serous ovarian cancer.
    Article Snippet: Genomic DNA was isolated from OV-MZ-6 and Kuramochi cells.

    Next-Generation Sequencing:

    Article Title: Prevalence and clinical impact of germline pathogenic variants in breast cancer: a descriptive large single-center study
    Article Snippet: DNA were extracted from peripheral blood samples using the Magnapure 96 system (Roche, Indianapolis, IN). .. Next-generation sequencing (NGS) libraries were prepared using the TruSight Rapid Capture Kit and Hereditary Cancer Panel (Illumina, San Diego, CA), with sequencing carried out on the MiSeq platform. ..

    Article Title: Prevalence and clinical impact of germline pathogenic variants in breast cancer: a descriptive large single-center study.
    Article Snippet: DNA were extracted from peripheral blood samples using the Magnapure 96 system (Roche, Indianapolis, IN). .. Nextgeneration sequencing (NGS) libraries were prepared using the TruSight Rapid Capture Kit and Hereditary Cancer Panel (Illumina, San Diego, CA), with sequencing carried out on the MiSeq platform. ..



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