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AUTODOCK GmbH software for molecular docking simulations
Software For Molecular Docking Simulations, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/docking+simulation+software/molecular+docking+software/pm39216304-66-7-0
Average 90 stars, based on 1 article reviews
software for molecular docking simulations - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Pleuromutilin derivative containing a thiazolo[5,4-c]pyridine side chain, and a preparation method and application thereof
Article Snippet: .. This step is crucial to computational efficiency, and the grid required for efficient docking calculations is generated by professional software. (5) Docking calculation: AutoDock molecular docking software was used to perform calculations to predict the binding mode between ligand and protein. (6) Binding mode analysis: After obtaining the docking results, an analysis of the binding modes is conducted to identify the most stable interactions. ..

Software:

Article Title: Pleuromutilin derivative containing a thiazolo[5,4-c]pyridine side chain, and a preparation method and application thereof
Article Snippet: .. This step is crucial to computational efficiency, and the grid required for efficient docking calculations is generated by professional software. (5) Docking calculation: AutoDock molecular docking software was used to perform calculations to predict the binding mode between ligand and protein. (6) Binding mode analysis: After obtaining the docking results, an analysis of the binding modes is conducted to identify the most stable interactions. ..

Article Title: Phytochemical screening, antioxidant, and antimicrobial analysis of Portulaca oleracea seeds with in-silico molecular docking insights
Article Snippet: Utilizing the open-source software AutoDock 4.249, we conducted molecular docking analysis, which involved tasks such as protein preparation, ligand preparation, grid generation, and the actual docking process. .. Subsequently, each of these biomolecules was individually input into the AutoDock molecular docking software. ..

Article Title: Deciphering the Antidepressant Potential of Piper betle L. Essential Oil and Its Inclusion Complex: Network Pharmacology and Experimental Insights.
Article Snippet: This study evaluates the antidepressant effects of Piper betle L. leaf essential oil (PBEO) and its inclusion complex (PBECD) in mice whilst exploring potential mechanisms.. Gas chromatography-mass spectroscopy (GC–MS) identified PBEO’s compounds, and β-cyclodextrins were used to enhance stability and bioavailability by forming PBECD.. Characterization was performed using various analytical techniques.

Article Title: Improved Bioavailability of Stilbenes from Cajanus cajan (L.) Millsp. Leaves Achieved by Hydroxypropyl- β -Cyclodextrin Inclusion: Preparation, Characterization and Pharmacokinetic Assessment.
Article Snippet: .. Molecular Docking Analysis To investigate the mechanisms of host–guest interaction between HP-β-CD and individual stilbene components, molecular docking was performed using AutoDock 4.2.6 software. ..

Binding Assay:

Article Title: Pleuromutilin derivative containing a thiazolo[5,4-c]pyridine side chain, and a preparation method and application thereof
Article Snippet: .. This step is crucial to computational efficiency, and the grid required for efficient docking calculations is generated by professional software. (5) Docking calculation: AutoDock molecular docking software was used to perform calculations to predict the binding mode between ligand and protein. (6) Binding mode analysis: After obtaining the docking results, an analysis of the binding modes is conducted to identify the most stable interactions. ..

Article Title: Folate-functionalized Zein-PEI nanoparticles for targeted cancer therapy: Integrated experimental and molecular dynamics insights into stability, uptake, and cytotoxicity.
Article Snippet: The rational engineering of biopolymeric nanocarriers with enhanced biocompatibility and targetability remains a central goal in cancer nanomedicine.. Here, we report the fabrication and comprehensive evaluation of zeinbased nanoparticles (ZNp) surface-modified with polyethyleneimine (PEI) and folic acid-conjugated PEI (PEI–FA) for folate receptor (FR)-targeted delivery to breast cancer cells.. Folic acid (FA) was covalently attached to branched PEI via EDC/NHS chemistry, with a conjugation efficiency of ~45 %, confirmed by UV–Vis, 1H NMR, and FTIR spectroscopy.

Article Title: AI-driven target screening and microfluidic sonication-assembled oral delivery of fucoxanthin-loaded probiotic vesicles for targeted alleviation of diet-induced obesity
Article Snippet: Obesity is associated with numerous diseases, and its increasing prevalence poses serious public health challenges.. Current pharmacological treatments, including appetite suppressants and fat absorption inhibitors, exhibit limited efficacy and adverse side effects.. This study developed a Lactobacillus-derived vesicle (LCEV) system using microfluidic-assisted ultrasound technology to encapsulate fucoxanthin (Fx).

Article Title: Bexarotene regulates zebrafish embryonic development by activating Wnt signaling pathway.
Article Snippet: Bexarotene (Bex) is a selective retinoid X receptor (RXR) agonist and is commonly used as an anti-tumor drug in the clinic to treat patients with cutaneous T-cell lymphoma (CTCL).. With the widespread use of this drug, people are increasingly concerned about its side effects and safety of use.. At present, the effects of bexarotene drugs on the health of organisms remain uncertain, but retinoid drugs are generally biologically active and may pose potential risks to them.



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