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Biotechnology Information datasets of dna microarray
Datasets Of Dna Microarray, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dna+microarray+dataset/dna+microarray/pm37165399-257-8-20
Average 90 stars, based on 1 article reviews
datasets of dna microarray - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Microarray:

Article Title: Gene set-based analysis of mucinous ovarian carcinoma.
Article Snippet: .. Sample information and means of the GSR indexes of MOC DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus database, including 45 MOC and 45 normal ovarian tissue control samples. ..

Article Title: The notch target gene HEYL modulates metastasis forming capacity of colorectal cancer patient-derived spheroid cells in vivo
Article Snippet: Numbers of patients with AJCC stage IV colorectal cancer in contrast to AJCC stage I-III colorectal cancer were analyzed using the chi-squared test. .. Whole human genome expression DNA microarray data sets of patients with CRC were obtained via National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) [ ]. .. All expression levels were measured as signal intensity within the Affymetrix Human Genome U133 Plus 2.0 Array.

Article Title: Expression of S100A8 protein on B cells is associated with disease activity in patients with systemic lupus erythematosus.
Article Snippet: .. Availability of data and materials The datasets of DNA microarray generated during this study are available in National Center for Biotechnology Information (GSE: 148,601). .. The datasets of LC-MSMS generated during this study are not publicly available due to an intellectual property protection agreement with Astellas Pharma Inc.

Article Title: The Potential Role of Complement System in the Progression of Ovarian Clear Cell Carcinoma Inferred from the Gene Ontology-Based Immunofunctionome Analysis
Article Snippet: .. DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database, including 23 samples of stage I, 4 samples of stage II, 12 samples of stage III, 5 samples of stage IV, and 41 samples of unconfirmed stages. ..

Article Title: Dysregulated Immunological Functionome and Dysfunctional Metabolic Pathway Recognized for the Pathogenesis of Borderline Ovarian Tumors by Integrative Polygenic Analytics
Article Snippet: .. DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database, and the sample data were obtained from 28 dataset series containing six different DNA microarray platforms without any missing data. ..

Article Title: Synergistic AHR Binding Pathway with EMT Effects on Serous Ovarian Tumors Recognized by Multidisciplinary Integrated Analysis
Article Snippet: .. The gene expression profiles of DNA microarray of serous ovarian tumors and normal controls were downloaded from the GEO repository at the National Center for Biotechnology Information (NCBI) archives. ..

Article Title: Expression of S100A8 protein on B cells is associated with disease activity in patients with systemic lupus erythematosus
Article Snippet: .. The datasets of DNA microarray generated during this study are available in National Center for Biotechnology Information (GSE: 148,601). .. The datasets of LC-MSMS generated during this study are not publicly available due to an intellectual property protection agreement with Astellas Pharma Inc.

Gene Expression:

Article Title: Gene set-based analysis of mucinous ovarian carcinoma.
Article Snippet: .. Sample information and means of the GSR indexes of MOC DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus database, including 45 MOC and 45 normal ovarian tissue control samples. ..

Article Title: The notch target gene HEYL modulates metastasis forming capacity of colorectal cancer patient-derived spheroid cells in vivo
Article Snippet: Numbers of patients with AJCC stage IV colorectal cancer in contrast to AJCC stage I-III colorectal cancer were analyzed using the chi-squared test. .. Whole human genome expression DNA microarray data sets of patients with CRC were obtained via National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) [ ]. .. All expression levels were measured as signal intensity within the Affymetrix Human Genome U133 Plus 2.0 Array.

Article Title: The CINSARC signature predicts the clinical outcome in patients with Luminal B breast cancer
Article Snippet: .. Gene expression profiles had been generated using DNA microarrays and RNA-Seq, and collected from the National Center for Biotechnology Information (NCBI)/Genbank GEO and ArrayExpress databases, and authors’ website. ..

Article Title: The Potential Role of Complement System in the Progression of Ovarian Clear Cell Carcinoma Inferred from the Gene Ontology-Based Immunofunctionome Analysis
Article Snippet: .. DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database, including 23 samples of stage I, 4 samples of stage II, 12 samples of stage III, 5 samples of stage IV, and 41 samples of unconfirmed stages. ..

Article Title: Dysregulated Immunological Functionome and Dysfunctional Metabolic Pathway Recognized for the Pathogenesis of Borderline Ovarian Tumors by Integrative Polygenic Analytics
Article Snippet: .. DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database, and the sample data were obtained from 28 dataset series containing six different DNA microarray platforms without any missing data. ..

Article Title: Synergistic AHR Binding Pathway with EMT Effects on Serous Ovarian Tumors Recognized by Multidisciplinary Integrated Analysis
Article Snippet: .. The gene expression profiles of DNA microarray of serous ovarian tumors and normal controls were downloaded from the GEO repository at the National Center for Biotechnology Information (NCBI) archives. ..

Control:

Article Title: Gene set-based analysis of mucinous ovarian carcinoma.
Article Snippet: .. Sample information and means of the GSR indexes of MOC DNA microarray gene expression datasets were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus database, including 45 MOC and 45 normal ovarian tissue control samples. ..

Expressing:

Article Title: The notch target gene HEYL modulates metastasis forming capacity of colorectal cancer patient-derived spheroid cells in vivo
Article Snippet: Numbers of patients with AJCC stage IV colorectal cancer in contrast to AJCC stage I-III colorectal cancer were analyzed using the chi-squared test. .. Whole human genome expression DNA microarray data sets of patients with CRC were obtained via National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) [ ]. .. All expression levels were measured as signal intensity within the Affymetrix Human Genome U133 Plus 2.0 Array.

Generated:

Article Title: Expression of S100A8 protein on B cells is associated with disease activity in patients with systemic lupus erythematosus.
Article Snippet: .. Availability of data and materials The datasets of DNA microarray generated during this study are available in National Center for Biotechnology Information (GSE: 148,601). .. The datasets of LC-MSMS generated during this study are not publicly available due to an intellectual property protection agreement with Astellas Pharma Inc.

Article Title: The CINSARC signature predicts the clinical outcome in patients with Luminal B breast cancer
Article Snippet: .. Gene expression profiles had been generated using DNA microarrays and RNA-Seq, and collected from the National Center for Biotechnology Information (NCBI)/Genbank GEO and ArrayExpress databases, and authors’ website. ..

Article Title: Expression of S100A8 protein on B cells is associated with disease activity in patients with systemic lupus erythematosus
Article Snippet: .. The datasets of DNA microarray generated during this study are available in National Center for Biotechnology Information (GSE: 148,601). .. The datasets of LC-MSMS generated during this study are not publicly available due to an intellectual property protection agreement with Astellas Pharma Inc.



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Image Search Results


Low-dimensional representation of variable DNA methylation sites across all placental and immune cell types and whole placental tissue samples shows samples cluster by cell type.

Journal: Epigenetics

Article Title: Placental and immune cell DNA methylation reference panel for bulk tissue cell composition estimation in epidemiological studies

doi: 10.1080/15592294.2024.2437275

Figure Lengend Snippet: Low-dimensional representation of variable DNA methylation sites across all placental and immune cell types and whole placental tissue samples shows samples cluster by cell type.

Article Snippet: To assess the performance of our placental DNA methylation deconvolution reference, we compared its ability to predict DNA methylation variation [ ] in a preprocessed placental whole tissue Illumina EPIC microarray DNA methylation dataset comprising 204 placentas across three cohorts (GEO accession number GSE232778) [ ] against the only existing multi-cell type reference [ ].

Techniques: DNA Methylation Assay

Analytic table of  DNA   methylation  samples used for deconvolution reference.

Journal: Epigenetics

Article Title: Placental and immune cell DNA methylation reference panel for bulk tissue cell composition estimation in epidemiological studies

doi: 10.1080/15592294.2024.2437275

Figure Lengend Snippet: Analytic table of DNA methylation samples used for deconvolution reference.

Article Snippet: To assess the performance of our placental DNA methylation deconvolution reference, we compared its ability to predict DNA methylation variation [ ] in a preprocessed placental whole tissue Illumina EPIC microarray DNA methylation dataset comprising 204 placentas across three cohorts (GEO accession number GSE232778) [ ] against the only existing multi-cell type reference [ ].

Techniques: DNA Methylation Assay, Fluorescence

Placental cell type differential DNA methylation. Volcano plots comparing site-specific DNA methylation levels in one cell type against the average across all other cell types.

Journal: Epigenetics

Article Title: Placental and immune cell DNA methylation reference panel for bulk tissue cell composition estimation in epidemiological studies

doi: 10.1080/15592294.2024.2437275

Figure Lengend Snippet: Placental cell type differential DNA methylation. Volcano plots comparing site-specific DNA methylation levels in one cell type against the average across all other cell types.

Article Snippet: To assess the performance of our placental DNA methylation deconvolution reference, we compared its ability to predict DNA methylation variation [ ] in a preprocessed placental whole tissue Illumina EPIC microarray DNA methylation dataset comprising 204 placentas across three cohorts (GEO accession number GSE232778) [ ] against the only existing multi-cell type reference [ ].

Techniques: DNA Methylation Assay

Top differentially methylated sites unique to the five placental cell types (cytotrophoblast, endothelial, Hofbauer, stromal, and syncytiotrophoblast) and nucleated red blood cells with gene annotations reveal highly specific DNA methylation profiles by cell type.

Journal: Epigenetics

Article Title: Placental and immune cell DNA methylation reference panel for bulk tissue cell composition estimation in epidemiological studies

doi: 10.1080/15592294.2024.2437275

Figure Lengend Snippet: Top differentially methylated sites unique to the five placental cell types (cytotrophoblast, endothelial, Hofbauer, stromal, and syncytiotrophoblast) and nucleated red blood cells with gene annotations reveal highly specific DNA methylation profiles by cell type.

Article Snippet: To assess the performance of our placental DNA methylation deconvolution reference, we compared its ability to predict DNA methylation variation [ ] in a preprocessed placental whole tissue Illumina EPIC microarray DNA methylation dataset comprising 204 placentas across three cohorts (GEO accession number GSE232778) [ ] against the only existing multi-cell type reference [ ].

Techniques: Methylation, DNA Methylation Assay

Summary graphs of the root mean square error of prediction in the ability to model principal components of DNA methylation in 204 placenta dataset GSE232778 for our expanded reference versus the existing reference implemented in planet from 1,000 repeats of a 10-fold cross-validation linear regression model with estimated cell composition as the predictor variables.

Journal: Epigenetics

Article Title: Placental and immune cell DNA methylation reference panel for bulk tissue cell composition estimation in epidemiological studies

doi: 10.1080/15592294.2024.2437275

Figure Lengend Snippet: Summary graphs of the root mean square error of prediction in the ability to model principal components of DNA methylation in 204 placenta dataset GSE232778 for our expanded reference versus the existing reference implemented in planet from 1,000 repeats of a 10-fold cross-validation linear regression model with estimated cell composition as the predictor variables.

Article Snippet: To assess the performance of our placental DNA methylation deconvolution reference, we compared its ability to predict DNA methylation variation [ ] in a preprocessed placental whole tissue Illumina EPIC microarray DNA methylation dataset comprising 204 placentas across three cohorts (GEO accession number GSE232778) [ ] against the only existing multi-cell type reference [ ].

Techniques: DNA Methylation Assay, Biomarker Discovery