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INFINIUM Inc massarray
Massarray, supplied by INFINIUM Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dna+massarray/massarray+system/pmc08905294-82-5-19
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massarray - by Bioz Stars, 2026-09
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DNA Methylation Assay:

Article Title: Prognostication of patients with clear cell renal cell carcinomas based on quantification of DNA methylation levels of CpG island methylator phenotype marker genes
Article Snippet: .. All 14 ccRCCs showing DNA methylation levels higher than the cutoff values listed in Table at 16 or more CpG units based on the present MassARRAY analysis (red bars in Figure B) were CIMP-positive ccRCCs identified by our previous hierarchical clustering based on the Infinium assay. .. All 88 ccRCCs showing DNA methylation levels higher than the cutoff values listed in Table at less than 16 CpG units based on the present MassARRAY analysis (blue bars in Figure B) were CIMP-negative ccRCCs identified by our previous hierarchical clustering based on the Infinium assay.

Article Title: Novel method for DNA methylation analysis using high‐performance liquid chromatography and its clinical application
Article Snippet: .. In our previous study, 14 ccRCC included in the present study were found to be CIMP‐positive using genome‐wide DNA methylation analysis by Infinium assay and DNA methylation quantification of the 7 ccRCC‐specific CIMP marker genes using the MassARRAY system. ..

Article Title: DNA methylation profile distinguishes clear cell sarcoma of the kidney from other pediatric renal tumors.
Article Snippet: .. We analyzed 6 each of RTK, CCSK, ESFT, and NK, the results of MassARRAY were well correlated with those of the Infinium assay, and each type of tumor revealed a specific DNA methylation pattern (Figure S2). ..

Article Title: Prognostic implication of PTPRH hypomethylation in non-small cell lung cancer
Article Snippet: Because investigation of DNA methylation by the MassARRAY system allowed a comprehensive coverage of CpG sites, we assessed DNA methylation levels at the relatively CpG-rich region containing the CpG site cg11261264 in the same LC-C2 samples using the MassARRAY system (Genomic positions of the CpG sites are shown in ). .. DNA methylation levels obtained by the MassARRAY system and Infinium assay correlated well (r=0.952, P=1.44×10 −73 ), confirming the reliability of the latter assay. ..

Article Title: DNA Methylation Profile Distinguishes Clear Cell Sarcoma of the Kidney from Other Pediatric Renal Tumors
Article Snippet: .. We analyzed 6 each of RTK, CCSK, ESFT, and NK, the results of MassARRAY were well correlated with those of the Infinium assay, and each type of tumor revealed a specific DNA methylation pattern ( ). ..

Article Title: Prognostication of patients with clear cell renal cell carcinomas based on quantification of DNA methylation levels of CpG island methylator phenotype marker genes
Article Snippet: All 14 ccRCCs showing DNA methylation levels higher than the cutoff values listed in Table at 16 or more CpG units based on the present MassARRAY analysis (red bars in Figure B) were CIMP-positive ccRCCs identified by our previous hierarchical clustering based on the Infinium assay. .. All 88 ccRCCs showing DNA methylation levels higher than the cutoff values listed in Table at less than 16 CpG units based on the present MassARRAY analysis (blue bars in Figure B) were CIMP-negative ccRCCs identified by our previous hierarchical clustering based on the Infinium assay. ..

Article Title: Prognostication of patients with clear cell renal cell carcinomas based on quantification of DNA methylation levels of CpG island methylator phenotype marker genes
Article Snippet: Significant correlations between DNA methylation levels determined by our previous Infinium assay [ ] and those determined by the present MassArray analysis were statistically confirmed ( P = 1.25 × 10 −35 , P = 1.98 × 10 −32 , P = 1.31 × 10 −41 , P = 5.30 × 10 −34 , P = 7.91 × 10 −22 and P = 7.61 × 10 −44 , respectively). .. In the present study, our primary intention was to evaluate quantitatively the DNA methylation status of not only the Infinium probe sites but also the entire promoter CpG islands in the ccRCC-specific CIMP marker genes using the MassARRAY system [ ]. ..

Genome Wide:

Article Title: Novel method for DNA methylation analysis using high‐performance liquid chromatography and its clinical application
Article Snippet: .. In our previous study, 14 ccRCC included in the present study were found to be CIMP‐positive using genome‐wide DNA methylation analysis by Infinium assay and DNA methylation quantification of the 7 ccRCC‐specific CIMP marker genes using the MassARRAY system. ..

Marker:

Article Title: Novel method for DNA methylation analysis using high‐performance liquid chromatography and its clinical application
Article Snippet: .. In our previous study, 14 ccRCC included in the present study were found to be CIMP‐positive using genome‐wide DNA methylation analysis by Infinium assay and DNA methylation quantification of the 7 ccRCC‐specific CIMP marker genes using the MassARRAY system. ..

Article Title: Prognostication of patients with clear cell renal cell carcinomas based on quantification of DNA methylation levels of CpG island methylator phenotype marker genes
Article Snippet: Significant correlations between DNA methylation levels determined by our previous Infinium assay [ ] and those determined by the present MassArray analysis were statistically confirmed ( P = 1.25 × 10 −35 , P = 1.98 × 10 −32 , P = 1.31 × 10 −41 , P = 5.30 × 10 −34 , P = 7.91 × 10 −22 and P = 7.61 × 10 −44 , respectively). .. In the present study, our primary intention was to evaluate quantitatively the DNA methylation status of not only the Infinium probe sites but also the entire promoter CpG islands in the ccRCC-specific CIMP marker genes using the MassARRAY system [ ]. ..

Amplification:

Article Title: How to Translate DNA Methylation Biomarkers Into Clinical Practice
Article Snippet: .. Targeted epigenetic clocks for pyrosequencing, MassArray, ddPCR, or barcoded amplicon sequencing can reach almost similar precision as described for Infinium BeadChip clocks ( ). ..

Sequencing:

Article Title: How to Translate DNA Methylation Biomarkers Into Clinical Practice
Article Snippet: .. Targeted epigenetic clocks for pyrosequencing, MassArray, ddPCR, or barcoded amplicon sequencing can reach almost similar precision as described for Infinium BeadChip clocks ( ). ..



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Sequenom massarray quantitative dna methylation analysis
ZNF582-AS1 expression was regulated by <t>DNA</t> <t>methylation</t> in ccRCC. a Detection of CpG islands in ZNF582-AS1 promoter and design of MSP primers. The horizontal axis of the curved lines represents the input sequence of ZNF582-AS1, and the vertical axis of the curved lines represents GC percentage. TSS: Transcription Start Sites. b MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC cell lines. c MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC tissues. d Detection of 38 CpG sites in ZNF582-AS1 promoter. e Quantitative detection of DNA methylation level of 38 CpG sites in ZNF582-AS1 promoter using Sequenom <t>MassARRAY</t> quantitative DNA methylation analysis. f and g Comparison of the DNA methylation levels of 38 CpG sites in ccRCC and adjacent normal renal tissues. h Treatment with 5-aza-dC and TSA demethylated ZNF582-AS1 promoter and increased ZNF582-AS1 expression in OSRC2 and Caki-1 cells. T refers to Tumor tissue of ccRCC, N refers to Adjacent normal kidney tissue. M = Methylated, U = Unmethylated
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ZNF582-AS1 expression was regulated by DNA methylation in ccRCC. a Detection of CpG islands in ZNF582-AS1 promoter and design of MSP primers. The horizontal axis of the curved lines represents the input sequence of ZNF582-AS1, and the vertical axis of the curved lines represents GC percentage. TSS: Transcription Start Sites. b MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC cell lines. c MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC tissues. d Detection of 38 CpG sites in ZNF582-AS1 promoter. e Quantitative detection of DNA methylation level of 38 CpG sites in ZNF582-AS1 promoter using Sequenom MassARRAY quantitative DNA methylation analysis. f and g Comparison of the DNA methylation levels of 38 CpG sites in ccRCC and adjacent normal renal tissues. h Treatment with 5-aza-dC and TSA demethylated ZNF582-AS1 promoter and increased ZNF582-AS1 expression in OSRC2 and Caki-1 cells. T refers to Tumor tissue of ccRCC, N refers to Adjacent normal kidney tissue. M = Methylated, U = Unmethylated

Journal: Journal of Experimental & Clinical Cancer Research : CR

Article Title: Downregulation of lncRNA ZNF582-AS1 due to DNA hypermethylation promotes clear cell renal cell carcinoma growth and metastasis by regulating the N(6)-methyladenosine modification of MT-RNR1

doi: 10.1186/s13046-021-01889-8

Figure Lengend Snippet: ZNF582-AS1 expression was regulated by DNA methylation in ccRCC. a Detection of CpG islands in ZNF582-AS1 promoter and design of MSP primers. The horizontal axis of the curved lines represents the input sequence of ZNF582-AS1, and the vertical axis of the curved lines represents GC percentage. TSS: Transcription Start Sites. b MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC cell lines. c MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC tissues. d Detection of 38 CpG sites in ZNF582-AS1 promoter. e Quantitative detection of DNA methylation level of 38 CpG sites in ZNF582-AS1 promoter using Sequenom MassARRAY quantitative DNA methylation analysis. f and g Comparison of the DNA methylation levels of 38 CpG sites in ccRCC and adjacent normal renal tissues. h Treatment with 5-aza-dC and TSA demethylated ZNF582-AS1 promoter and increased ZNF582-AS1 expression in OSRC2 and Caki-1 cells. T refers to Tumor tissue of ccRCC, N refers to Adjacent normal kidney tissue. M = Methylated, U = Unmethylated

Article Snippet: TSS: Transcription Start Sites. b MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC cell lines. c MSP analysis of ZNF582-AS1 promoter DNA methylation status in ccRCC tissues. d Detection of 38 CpG sites in ZNF582-AS1 promoter. e Quantitative detection of DNA methylation level of 38 CpG sites in ZNF582-AS1 promoter using Sequenom MassARRAY quantitative DNA methylation analysis. f and g Comparison of the DNA methylation levels of 38 CpG sites in ccRCC and adjacent normal renal tissues. h Treatment with 5-aza-dC and TSA demethylated ZNF582-AS1 promoter and increased ZNF582-AS1 expression in OSRC2 and Caki-1 cells.

Techniques: Expressing, DNA Methylation Assay, Sequencing, Comparison, Methylation