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gs de novo assembler gs flx data processing software  (Roche)


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    Structured Review

    Roche gs de novo assembler gs flx data processing software
    Gs De Novo Assembler Gs Flx Data Processing Software, supplied by Roche, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+and+assembly/pm20696791-72-7-16
    Average 86 stars, based on 1 article reviews
    gs de novo assembler gs flx data processing software - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Software:

    Article Title: Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
    Article Snippet: Sequencing libraries of the archaeal strains M. chikugoensis L21-II-0 and M. wolfeii SIV6 were made from 2 μg of chromosomal DNA using the TruSeq DNA PCR-Free Library Preparation Kit (Illumina Inc., Eindhoven, Netherlands) and sequenced applying the paired-end protocol on an Illumina MiSeq system. .. The obtained sequences were de novo assembled using the GS de novo Assembler Software (version 2.8, Roche). ..

    Article Title: Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green Microalga <i>Botryococcus braunii</i> Race B (Showa)
    Article Snippet: For the establishment of the Botryococcus braunii race B (Showa) organelle genome sequences, purified DNA was used to construct a paired-end sequencing library (Illumina, USA). .. The obtained sequence reads (2 250 bp) were assembled using the GS De Novo Assembler software (version 2.8, Roche, Mannheim, Germany), which resulted in one contig for each replicon. ..

    Article Title: Corynebacterium crudilactis sp. nov., isolated from raw cow's milk.
    Article Snippet: .. The paired reads were assembled with the Roche GS De Novo Assembler software (Newbler; release 2.8), yielding 25 scaffolds with 35 scaffolded contigs. .. A 7-kb mate pair library was prepared with the Nextera mate pair sample preparation kit according to the gel-plus protocol.

    Article Title: Complete Genome Sequence of <i>Herbinix luporum</i> SD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
    Article Snippet: .. The obtained sequences were de novo assembled (8) using the GS De Novo Assembler software (version 2.8; Roche) and resulted in one scaffold comprising 19 contigs. ..

    Article Title: Extreme positive selection on a new highly-expressed larval glycoprotein (LGP) gene in Galaxias fishes (Osmeriformes: Galaxiidae).
    Article Snippet: 454 Sequencing Samples of cDNA from G. brevipinnis and Galaxias depressiceps larvae were sequenced by GS FLX pyrosequencing (Roche). .. DNA reads were assembled into contigs using GS De Novo Assembler GS FLX Data Processing Software (Roche). ..

    Article Title: Molecular characterization of the pSinB plasmid of the arsenite oxidizing, metallotolerant Sinorhizobium sp. M14 - insight into the heavy metal resistome of sinorhizobial extrachromosomal replicons.
    Article Snippet: Highthroughput sequencing of the MID-tagged shotgun plasmid libraries was performed using a Genome Sequencer FLX system (Roche/454 Life Sciences, Branford, USA). .. The GS de novo assembler software (Roche) was applied for the sequence assemblies. ..

    Sequencing:

    Article Title: Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green Microalga <i>Botryococcus braunii</i> Race B (Showa)
    Article Snippet: For the establishment of the Botryococcus braunii race B (Showa) organelle genome sequences, purified DNA was used to construct a paired-end sequencing library (Illumina, USA). .. The obtained sequence reads (2 250 bp) were assembled using the GS De Novo Assembler software (version 2.8, Roche, Mannheim, Germany), which resulted in one contig for each replicon. ..

    Article Title: Molecular characterization of the pSinB plasmid of the arsenite oxidizing, metallotolerant Sinorhizobium sp. M14 - insight into the heavy metal resistome of sinorhizobial extrachromosomal replicons.
    Article Snippet: Highthroughput sequencing of the MID-tagged shotgun plasmid libraries was performed using a Genome Sequencer FLX system (Roche/454 Life Sciences, Branford, USA). .. The GS de novo assembler software (Roche) was applied for the sequence assemblies. ..



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