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Lexogen GmbH data analysis pipeline for quantseq
Data Analysis Pipeline For Quantseq, supplied by Lexogen GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+analysis+pipeline+for+quantseq/quantseq+data+analysis+pipeline/pm40436116-192-12-7
Average 90 stars, based on 1 article reviews
data analysis pipeline for quantseq - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Coordinated regulation by lncRNAs results in tight lncRNA-target couplings.
Article Snippet: QuantSeq RNA-seq library preparation (Lexogen) was performed according to the manufacturer’s protocol using 5 μL of cell lysate as input.

Article Title: Mast cells activated in vitro can modulate macrophage polarization and antibacterial responses.
Article Snippet: Raw sequencing data were processed using the Lexogen data analysis pipeline for QuantSeq.

Article Title: Arabidopsis uses a molecular grounding mechanism and a biophysical circuit breaker to limit floral abscission signaling.
Article Snippet: We explore how signaling pathways are modulated to prevent errant activation of a biological activity, using Arabidopsis floral abscission as a model. We identify a protein phosphatase that forms a molecular threshold to prevent spurious activation of the abscission pathway.. We liken this phosphatase to a grounding mechanism in an electrical circuit, dissipating excess energy that could damage other system components.. Second, we identify a spatial gradient in the expression of IDA family genes, encoding key activators of abscission.

Article Title: SETD2 methyltransferase activity aids gene definition by promoting correct transcription initiation and termination
Article Snippet: Subsequent processing of the FastQ files was carried out according to Lexogen’s QuantSeq analysis workflow, including alignment and generation of BAM files.

Article Title: Human skeletal muscle fiber heterogeneity beyond myosin heavy chains.
Article Snippet: Our pipeline was based on the QuantSeq Pool data analysis pipeline from Lexogen (https://github.com/ Lexogen-Tools/quantseqpool_analysis).

Article Title: Human skeletal muscle fiber heterogeneity beyond myosin heavy chains
Article Snippet: Our pipeline was based on the QuantSeq Pool data analysis pipeline from Lexogen ( https://github.com/Lexogen-Tools/quantseqpool_analysis ).

Sequencing:

Article Title: Sulforaphane acutely activates multiple starvation response pathways
Article Snippet: .. The Lexogen QuantSeq sequencing data was aligned using a pipeline established by Bluebee, the Lexogen associated data analysis tool. ..

Control:

Article Title: Cellular deconstruction of the human skeletal muscle microenvironment identifies an exercise-induced histaminergic crosstalk.
Article Snippet: Initial data processing Read data underwent quality control andwas demultiplexed, trimmed, aligned, deduplicated and counted, according to the Lexogen QuantSeq Pool pipeline (https://github.com/Lexogen-Tools/quantseqpool_analysis). .. Initial data processing Read data underwent quality control andwas demultiplexed, trimmed, aligned, deduplicated and counted, according to the Lexogen QuantSeq Pool pipeline (https://github.com/Lexogen-Tools/quantseqpool_analysis). ..



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