earray custom microarray design service (Agilent technologies)
Structured Review
![A) Schematic representation of the daily distribution of metabolic processes resulting from the transcriptional signature of several differentially expressed genes throughout the 24-hour cycle. The different metabolic processes are indicated by gradiently colored arrows showing the time of the day corresponding to the higher expression levels of gene groups. The lengths of the arrows and darker colors indicate, respectively, intervals and peaks of expression. Local times are indicated at the bottom of the figure where an indicative representation of light intensity is also shown. The breakdown of energy-yielding nutrients (glycolysis, the Krebs cycle and the electron transport chain) and energy storage pathways (glycogen synthesis and fatty acid synthesis) are specifically activated in the early morning, while glycogen mobilization, gluconeogenesis and fatty acids catabolism are used as a stored energy source in the evening and throughout the night. B) Gene expression profiles of transcripts involved in energetic and metabolic processes are represented. The color of each gene corresponds to the metabolic process in which it is involved. Dashed lines indicate differentially expressed genes identified by a one-way ANOVA test, while solid lines represent differentially expressed genes characterized by a sinusoidal expression patterns detected by CircWaveBatch analysis. <t>Microarray</t> expression values are represented as log 2 mean ± standard deviation. Genes are represented with the following abbreviations: fructose 1,6-bisphosphatase ( FB ), glyceraldehyde-3-phosphate dehydrogenase ( GPD ), pyruvate kinase ( PK ), 6-phosphofructokinase ( 6P ), citrate synthase ( CS ), ATP synthase b ( ATP ), succinate dehydrogenase type C ( SD ), isocitrate dehydrogenase [NAD] subunit beta mitochondrial ( ID ), Acetyl-CoA acetyltransferase ( ACA ), short-chain specific acyl-CoA dehydrogenase ( ACD ), Acetyl-CoA carboxylase ( ACC ), ATP citrate lyase subunit beta ( ACL ), glycogen debranching enzyme-like ( GDE ), glycogen synthase ( GS ), and Glycogenin-1 ( G ).](https://pub-med-central-images-cdn.bioz.com/pub_med_central_ids_ending_with_4250/pmc03714250/pmc03714250__pone.0068652.g002.jpg)
Earray Custom Microarray Design Service, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/custom+microarray+services/pmc03714250-176-6-12
Average 90 stars, based on 1 article reviews
Images
1) Product Images from "The Antarctic Krill Euphausia superba Shows Diurnal Cycles of Transcription under Natural Conditions"
Article Title: The Antarctic Krill Euphausia superba Shows Diurnal Cycles of Transcription under Natural Conditions
Journal: PLoS ONE
doi: 10.1371/journal.pone.0068652
Figure Legend Snippet: A) Schematic representation of the daily distribution of metabolic processes resulting from the transcriptional signature of several differentially expressed genes throughout the 24-hour cycle. The different metabolic processes are indicated by gradiently colored arrows showing the time of the day corresponding to the higher expression levels of gene groups. The lengths of the arrows and darker colors indicate, respectively, intervals and peaks of expression. Local times are indicated at the bottom of the figure where an indicative representation of light intensity is also shown. The breakdown of energy-yielding nutrients (glycolysis, the Krebs cycle and the electron transport chain) and energy storage pathways (glycogen synthesis and fatty acid synthesis) are specifically activated in the early morning, while glycogen mobilization, gluconeogenesis and fatty acids catabolism are used as a stored energy source in the evening and throughout the night. B) Gene expression profiles of transcripts involved in energetic and metabolic processes are represented. The color of each gene corresponds to the metabolic process in which it is involved. Dashed lines indicate differentially expressed genes identified by a one-way ANOVA test, while solid lines represent differentially expressed genes characterized by a sinusoidal expression patterns detected by CircWaveBatch analysis. Microarray expression values are represented as log 2 mean ± standard deviation. Genes are represented with the following abbreviations: fructose 1,6-bisphosphatase ( FB ), glyceraldehyde-3-phosphate dehydrogenase ( GPD ), pyruvate kinase ( PK ), 6-phosphofructokinase ( 6P ), citrate synthase ( CS ), ATP synthase b ( ATP ), succinate dehydrogenase type C ( SD ), isocitrate dehydrogenase [NAD] subunit beta mitochondrial ( ID ), Acetyl-CoA acetyltransferase ( ACA ), short-chain specific acyl-CoA dehydrogenase ( ACD ), Acetyl-CoA carboxylase ( ACC ), ATP citrate lyase subunit beta ( ACL ), glycogen debranching enzyme-like ( GDE ), glycogen synthase ( GS ), and Glycogenin-1 ( G ).
Techniques Used: Expressing, Microarray, Standard Deviation
Related Articles
Microarray:Article Title: Functional Characterization of d rim2the Drosophila melanogaster Homolog of the Yeast Mitochondrial Deoxynucleotide Transporter Article Snippet: .. Probes were designed using the Agilent Article Title: Mining gene expression data for rational identification of novel drug targets and vaccine candidates against the cattle tick, Rhipicephalus microplus Article Snippet: .. A total of 28 913 sequences were submitted online for Article Title: Salmon lice ( Lepeophtheirus salmonis ) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression Article Snippet: .. Standard expression microarrays were designed using the Article Title: Functional Characterization of drim2, the Drosophila melanogaster Homolog of the Yeast Mitochondrial Deoxynucleotide Transporter Article Snippet: .. DNA Microarray Design—Probes were designed using the Agilent Article Title: IL-22 Is Expressed by the Invasive Trophoblast of the Equine ( Equus caballus ) Chorionic Girdle Article Snippet: All 37,316 available horse-expressed sequence tag sequences were combined with the RefSeq and UNIGENE entries to provide a transcriptome file for the eArray pipeline. .. Horse-specific mRNA sequences were uploaded into the Agilent Article Title: The Antarctic Krill Euphausia superba Shows Diurnal Cycles of Transcription under Natural Conditions Article Snippet: .. Probes were designed using the Agilent Article Title: The Long Noncoding RNA HEAL Regulates HIV-1 Replication through Epigenetic Regulation of the HIV-1 Promoter Article Snippet: .. Briefly, cDNA sequences of human lncRNAs were collected from two databases: 1,703 defined lncRNA sequences were downloaded from Ensembl (release 61) and 2,915 were downloaded from Havana ( ). cDNA sequences were uploaded into the Agilent Expressing:Article Title: Salmon lice ( Lepeophtheirus salmonis ) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression Article Snippet: .. Standard expression microarrays were designed using the other:Article Title: Molecular Analysis of Endocrine Disruption in Hornyhead Turbot at Wastewater Outfalls in Southern California Using a Second Generation Multi-Species Microarray Article Snippet: We designed in silico a 60-mer oligonucleotide-based multi-species microarray using the Software:Article Title: The Long Noncoding RNA HEAL Regulates HIV-1 Replication through Epigenetic Regulation of the HIV-1 Promoter Article Snippet: .. Briefly, cDNA sequences of human lncRNAs were collected from two databases: 1,703 defined lncRNA sequences were downloaded from Ensembl (release 61) and 2,915 were downloaded from Havana ( ). cDNA sequences were uploaded into the Agilent |

