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constrained non-negative matrix factorization (cnmfe) algorithm  (MathWorks Inc)


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    Structured Review

    MathWorks Inc constrained non-negative matrix factorization (cnmfe) algorithm
    KEY RESOURCES TABLE
    Constrained Non Negative Matrix Factorization (Cnmfe) Algorithm, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/constrained+non-negative+matrix+factorization+(cnmfe)+algorithm/pmc09210496-506-5-12
    Average 90 stars, based on 1 article reviews
    constrained non-negative matrix factorization (cnmfe) algorithm - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Neural circuit pathology driven by Shank3 mutation disrupts social behaviors"

    Article Title: Neural circuit pathology driven by Shank3 mutation disrupts social behaviors

    Journal: Cell reports

    doi: 10.1016/j.celrep.2022.110906

    KEY RESOURCES TABLE
    Figure Legend Snippet: KEY RESOURCES TABLE

    Techniques Used: Virus, Purification, Plasmid Preparation, Recombinant, Adhesive, Electron Microscopy, Software, Optogenetics, Imaging, Microscopy, Hood, Real-time Polymerase Chain Reaction, Injection, Patch Clamp

    Related Articles

    Modification:

    Article Title: A molecularly defined brain circuit module for regulating panic-like defensive state
    Article Snippet: Ca 2+ signal traces of Cbln2+ PHN neurons were extracted with the extended constrained non-negative matrix factorization (CNMF-E) in MATLAB (MathWorks).

    Article Title: AMPAkines have site-specific analgesic effects in the cortex
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, the Ca 2+ signals were obtained to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI) 69,70 .

    Article Title: AMPAkines have site-specific analgesic effects in the cortex.
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, the Ca2+ signals were obtained to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI)69,70.


    Article Title: Anterior cingulate cortex regulates pain catastrophizing-like behaviors in rats
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, Ca 2+ signals were extracted to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI).

    Article Title: Oxytocin promotes prefrontal population activity via the PVN-PFC pathway to regulate pain.
    Article Snippet: To estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI), Ca2+ signals were extracted using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB.80–82 Cross-session neuronal regions of interest (ROIs) were matched using CellReg by comparing contours and centroid locations.77 e3 Neuron 111, 1795–1811.e1–e7, June 7, 2023 Cannula implantation and intracranial injection For cannula implantations, rats were anesthetized with isoflurane (1.5–2%) and underwent the procedure as described previously.83 Rats were stereotaxically implanted with two 26G guide cannulas (P1 Technologies, Roanoke, VA) bilaterally in the PL-PFC at AP +2.9mm,ML ±1.6mm, andDV -2.2mm,with the tips angled at 20 towards themidline.

    Article Title: Anterior cingulate cortex regulates pain catastrophizing-like behaviors in rats.
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, Ca2+ signals were extracted to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI).

    Article Title: A molecularly defined brain circuit module for regulating panic-like defensive state.
    Article Snippet: Ca2+ signal traces of Cbln2+ PHN neurons were extracted with the extended constrained non-negative matrix factorization (CNMF-E) in MATLAB (MathWorks).

    Activity Assay:

    Article Title: A molecularly defined brain circuit module for regulating panic-like defensive state
    Article Snippet: Ca 2+ signal traces of Cbln2+ PHN neurons were extracted with the extended constrained non-negative matrix factorization (CNMF-E) in MATLAB (MathWorks).

    Article Title: AMPAkines have site-specific analgesic effects in the cortex
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, the Ca 2+ signals were obtained to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI) 69,70 .

    Article Title: AMPAkines have site-specific analgesic effects in the cortex.
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, the Ca2+ signals were obtained to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI)69,70.


    Article Title: Anterior cingulate cortex regulates pain catastrophizing-like behaviors in rats
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, Ca 2+ signals were extracted to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI).

    Article Title: Oxytocin promotes prefrontal population activity via the PVN-PFC pathway to regulate pain.
    Article Snippet: To estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI), Ca2+ signals were extracted using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB.80–82 Cross-session neuronal regions of interest (ROIs) were matched using CellReg by comparing contours and centroid locations.77 e3 Neuron 111, 1795–1811.e1–e7, June 7, 2023 Cannula implantation and intracranial injection For cannula implantations, rats were anesthetized with isoflurane (1.5–2%) and underwent the procedure as described previously.83 Rats were stereotaxically implanted with two 26G guide cannulas (P1 Technologies, Roanoke, VA) bilaterally in the PL-PFC at AP +2.9mm,ML ±1.6mm, andDV -2.2mm,with the tips angled at 20 towards themidline.

    Article Title: Anterior cingulate cortex regulates pain catastrophizing-like behaviors in rats.
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, Ca2+ signals were extracted to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI).

    Article Title: A molecularly defined brain circuit module for regulating panic-like defensive state.
    Article Snippet: Ca2+ signal traces of Cbln2+ PHN neurons were extracted with the extended constrained non-negative matrix factorization (CNMF-E) in MATLAB (MathWorks).

    Injection:

    Article Title: A molecularly defined brain circuit module for regulating panic-like defensive state
    Article Snippet: Ca 2+ signal traces of Cbln2+ PHN neurons were extracted with the extended constrained non-negative matrix factorization (CNMF-E) in MATLAB (MathWorks).

    Article Title: AMPAkines have site-specific analgesic effects in the cortex
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, the Ca 2+ signals were obtained to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI) 69,70 .

    Article Title: AMPAkines have site-specific analgesic effects in the cortex.
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, the Ca2+ signals were obtained to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI)69,70.


    Article Title: Anterior cingulate cortex regulates pain catastrophizing-like behaviors in rats
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, Ca 2+ signals were extracted to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI).

    Article Title: Oxytocin promotes prefrontal population activity via the PVN-PFC pathway to regulate pain.
    Article Snippet: To estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI), Ca2+ signals were extracted using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB.80–82 Cross-session neuronal regions of interest (ROIs) were matched using CellReg by comparing contours and centroid locations.77 e3 Neuron 111, 1795–1811.e1–e7, June 7, 2023 Cannula implantation and intracranial injection For cannula implantations, rats were anesthetized with isoflurane (1.5–2%) and underwent the procedure as described previously.83 Rats were stereotaxically implanted with two 26G guide cannulas (P1 Technologies, Roanoke, VA) bilaterally in the PL-PFC at AP +2.9mm,ML ±1.6mm, andDV -2.2mm,with the tips angled at 20 towards themidline.

    Article Title: Anterior cingulate cortex regulates pain catastrophizing-like behaviors in rats.
    Article Snippet: Using modified constrained non-negative matrix factorization scripts (CNMF_E) in MATLAB, Ca2+ signals were extracted to estimate temporally constrained instances of calcium activity for each neuronal region of interest (ROI).

    Article Title: A molecularly defined brain circuit module for regulating panic-like defensive state.
    Article Snippet: Ca2+ signal traces of Cbln2+ PHN neurons were extracted with the extended constrained non-negative matrix factorization (CNMF-E) in MATLAB (MathWorks).



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    MathWorks Inc constrained non-negative matrix factorization (cnmfe) algorithm
    KEY RESOURCES TABLE
    Constrained Non Negative Matrix Factorization (Cnmfe) Algorithm, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/constrained+non-negative+matrix+factorization+(cnmfe)+algorithm/pmc09210496-506-5-12
    Average 90 stars, based on 1 article reviews
    constrained non-negative matrix factorization (cnmfe) algorithm - by Bioz Stars, 2026-10
    90/100 stars
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    KEY RESOURCES TABLE

    Journal: Cell reports

    Article Title: Neural circuit pathology driven by Shank3 mutation disrupts social behaviors

    doi: 10.1016/j.celrep.2022.110906

    Figure Lengend Snippet: KEY RESOURCES TABLE

    Article Snippet: We then implemented the constrained non-negative matrix factorization (CNMFe) algorithm written in MATLAB (Mathworks) scripts for simultaneous denoising, deconvolving, and demixing of Ca 2+ signals as well as automatic cell identification ( ).

    Techniques: Virus, Purification, Plasmid Preparation, Recombinant, Adhesive, Electron Microscopy, Software, Optogenetics, Imaging, Microscopy, Hood, Real-time Polymerase Chain Reaction, Injection, Patch Clamp