other:
Polymerase Chain Reaction:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
TA Cloning:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Labeling:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Recombinant:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Sequencing:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
In Situ Hybridization:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Fluorescence In Situ Hybridization:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Amplification:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Staining:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Software:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Single Cell:Article Title: In mice, discrete odors can selectively promote the neurogenesis of sensory neuron subtypes that they stimulate
Article Snippet: Reagent type (species) or resource Designation Source or reference Identifiers Additional information Strain, strain background (Mus musculus) C57BL/6 J The Jackson Laboratory Strain # 000664 PD 28, 35, or 65 days (Supplementary file 1) Chemical compound, drug (R)–3- methylcyclopentadecanone (muscone) Ambeed Cat# A275816 Chemical compound, drug 5- cyclohexadecenone (ambretone) TCI Ltd. Cat# C0874 Chemical compound, drug 2- (sec- Butyl)–4,5- dihydrothiazole (SBT) Ambeed Cat# A578012 Chemical compound, drug isoamyl acetate (IAA) TCI Ltd. Cat# A0033 Chemical compound, drug 8- cyclohexadecenone (globanone) Perfumer’s Apprentice Cat # ac- 1510- sz1 Hossain et al. eLife 2024;13:RP96152. .. DOI: https://doi.org/10.7554/eLife.96152 21 of 33 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Chemical compound, drug Cyclopentadecanol was fromTCI America Cat# C1528 Chemical compound, drug 5- ethynyl- 2 ́-deoxyuridine (EdU) Carbosynth Cat# NE08701 10 mg/mL in PBS; 50 mg EdU/kg mouse Commercial assay or kit Expand High Fidelity PCR System Roche Cat# 11732650001 Commercial assay or kit TOPO TA Cloning Kit, Dual Promoter ThermoFisher Cat# K460001 Commercial assay or kit DIG RNA Labeling Mix Roche Cat# 11277073910 Peptide, recombinant protein T7 RNA Polymerase NEB Cat# M0251L Peptide, recombinant protein Sp6 RNA Polymerase NEB Cat# M0207S Peptide, recombinant protein RQ1 RNase- Free DNase Promega Cat# M6101 Sequence- based reagent DIG- labeled RNA fluorescent in situ hybridization probes This paper Please see Supplementary file 2 FISH (1:750) Antibody Anti- Digoxigenin- POD, Fab fragments Roche Cat# 11207733910, RRID:AB_514500 FISH (1:1000) Commercial assay or kit Tyramide Signal Amplification Plus Fluorescein Kit Akoya Biosciences SKU NEL741001KT Chemical compound, drug Sulfo- Cyanine3 azide Lumiprobe Cat# A1330 EdU staining (4 μM) Software, algorithm Zen Blue software Zeiss Software, algorithm Imaris software Oxford Instruments version 10.2 Other Hibernate AB Complete medium BrainBits Cat# HAB100 Peptide, recombinant protein Papain BrainBits Cat# PAP Other Hibernate A- minus Calcium medium BrainBits Cat# HACA100 Other NbActiv1 neuronal culturing medium BrainBits Cat# NbActiv1- 100 Commercial assay or kit LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen Cat# L34957 Commercial assay or kit Chromium Single Cell 3' HT Kit v3.1 10 X Genomics PN- 1000348 Software, algorithm Cell Ranger software 10 X Genomics Version 8.0.1 Software, algorithm Loupe Browser software 10 X Genomics Version 8.0.0 Software, algorithm Prism software Graphpad Version 10 Continued Experimental model and subject details All procedures involving mice were carried out in accordance with NIH standards and approved by the University of Colorado Anschutz Medical Campus Institutional Animal Care and Use Committee (IACUC). ..
Synthesized:
Liposomes:Article Title: Targeting peptide to deliver a compound to oocytes
Article Snippet: .. For example, when the protein transferrin (Tf) was used as a ligand and chemically conjugated to molecular compound such as toxins (FitzGerald et al., 1983), liposomes (Hege et al., 1989; Matthay et al., 1989) proteins (Wagner, Curiel and Cotten, 1994) or DNA (Stavridis and Psallidopoulos, 1982), these molecules were internalized into the cell via the transferrin receptor (TfR) and released into the cell cytoplasm in vitro and in vivo (Widera, Norouziyan and Shen, 2003; Vácha, Martinez-Veracoechea and Frenkel, 2011; Chen et al., 2013). ..
In Vitro:Article Title: Targeting peptide to deliver a compound to oocytes
Article Snippet: .. For example, when the protein transferrin (Tf) was used as a ligand and chemically conjugated to molecular compound such as toxins (FitzGerald et al., 1983), liposomes (Hege et al., 1989; Matthay et al., 1989) proteins (Wagner, Curiel and Cotten, 1994) or DNA (Stavridis and Psallidopoulos, 1982), these molecules were internalized into the cell via the transferrin receptor (TfR) and released into the cell cytoplasm in vitro and in vivo (Widera, Norouziyan and Shen, 2003; Vácha, Martinez-Veracoechea and Frenkel, 2011; Chen et al., 2013). ..
In Vivo:Article Title: Targeting peptide to deliver a compound to oocytes
Article Snippet: .. For example, when the protein transferrin (Tf) was used as a ligand and chemically conjugated to molecular compound such as toxins (FitzGerald et al., 1983), liposomes (Hege et al., 1989; Matthay et al., 1989) proteins (Wagner, Curiel and Cotten, 1994) or DNA (Stavridis and Psallidopoulos, 1982), these molecules were internalized into the cell via the transferrin receptor (TfR) and released into the cell cytoplasm in vitro and in vivo (Widera, Norouziyan and Shen, 2003; Vácha, Martinez-Veracoechea and Frenkel, 2011; Chen et al., 2013). ..
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