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human 1 cdna microarray platform  (Agilent technologies)


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    Structured Review

    Agilent technologies human 1 cdna microarray platform
    Human 1 Cdna Microarray Platform, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cdna+microarray+platform/pmc01127107-27-19-18
    Average 90 stars, based on 1 article reviews
    human 1 cdna microarray platform - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Isolation:

    Article Title: A de novo 13q31.3 microduplication encompassing the miR-17 ~ 92 cluster results in features mirroring those associated with Feingold syndrome 2.
    Article Snippet: Hemizygosity of the MIR17HG gene encoding the miR-17 ~ 92 cluster is associated with Feingold syndrome 2 characterized by intellectual disability, skeletal abnormalities, short stature, and microcephaly.. Here, we report on a female with a de novo 13q31.3 microduplication encompassing MIR17HG but excluding GPC5.. She presented developmental delay, skeletal and digital abnormalities, and features such as tall stature and macrocephaly mirroring those of Feingold syndrome 2 patients.

    DNA Extraction:

    Article Title: A de novo 13q31.3 microduplication encompassing the miR-17 ~ 92 cluster results in features mirroring those associated with Feingold syndrome 2.
    Article Snippet: Hemizygosity of the MIR17HG gene encoding the miR-17 ~ 92 cluster is associated with Feingold syndrome 2 characterized by intellectual disability, skeletal abnormalities, short stature, and microcephaly.. Here, we report on a female with a de novo 13q31.3 microduplication encompassing MIR17HG but excluding GPC5.. She presented developmental delay, skeletal and digital abnormalities, and features such as tall stature and macrocephaly mirroring those of Feingold syndrome 2 patients.

    Generated:

    Article Title: MAID : An effect size based model for microarray data integration across laboratories and platforms
    Article Snippet: These datasets were collected using two different versions of Agilent array technology. .. One dataset was generated using two-channel Agilent Human 1 cDNA array platform containing 12,814 probes. ..

    Microarray:

    Article Title: Meta-Analysis of Gene Expressions in Testicular Germ Cell Tumor Histologies
    Article Snippet: .. The second microarray [ ] used Agilent Human 1 A oligo assay (Agilent Technologies Inc, Palo Alto, CA, USA) to analyze RNA expression and was available in GEO at ascension number GSE 1818 ( http:ww.ncbi.gov.gen/query/ace.cgi?acc.GSE 1818) and included three samples of NT, three samples of GCNIS, three samples of SE, five samples of EC, four samples of YST, four samples of YST, and one sample of CC. ..

    Article Title: Advanced analysis and visualization of gene copy number and expression data
    Article Snippet: .. The CGH experiments were performed with cDNA arrays on Human 1 cDNA microarray slides (Agilent Technologies, Palo Alto, CA, USA). ..

    Article Title: CGHpower: exploring sample size calculations for chromosomal copy number experiments
    Article Snippet: .. They will be referred to as Chin et al. [ ], Douglas et al. [ ], Fridlyand et al. [ ], Myllykangas et al. [ ], Nymark et al. [ ], Postma et al. [ ], Smeets et al. [ ] and Wrage et al. [ ] A total of five different array types were used among the data sets: VUmc 30 K spotted oligo [ ] for data sets [ , , ], Agilent Human 1 cDNA Microarray for [ , ], 3 K BAC array [ ] for [ ], 2 K BAC array [ ] for [ ] and 6 K BAC array for [ ]. ..

    Article Title: Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
    Article Snippet: .. In a recent study, we compared several Affymetrix platforms (for which probe sequence information was available) to the Agilent Human 1 cDNA microarray platform [ ]. .. Probe sequence information was unavailable for the Agilent platform except for a 100 base lead sequence at one end of each cDNA probe.

    Article Title: Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer
    Article Snippet: .. Copy number variation data for primary ovarian tumors was downloaded from TCGA ( http://tcga.cancer.gov/ ) and CBS data files from the Agilent SurePrint G3 Human 1 M CGH (Comparative Genomic Hybridization) Microarray with the label mskcc.org_OV.CGH-1×1M_G4447A were analyzed. ..

    RNA Expression:

    Article Title: Meta-Analysis of Gene Expressions in Testicular Germ Cell Tumor Histologies
    Article Snippet: .. The second microarray [ ] used Agilent Human 1 A oligo assay (Agilent Technologies Inc, Palo Alto, CA, USA) to analyze RNA expression and was available in GEO at ascension number GSE 1818 ( http:ww.ncbi.gov.gen/query/ace.cgi?acc.GSE 1818) and included three samples of NT, three samples of GCNIS, three samples of SE, five samples of EC, four samples of YST, four samples of YST, and one sample of CC. ..

    Labeling:

    Article Title: Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation
    Article Snippet: .. Briefly, 20 μg of total RNA were direct-labeled with Cy-3 and Cy-5, and labeled cDNAs were hybridized overnight to Agilent Human 1 cDNA arrays (G4100a, Agilent Technologies, Palo Alto, CA) containing 16,142 features representing approximately 10,500 unique genes. .. After washing, the microarrays were scanned in an Agilent model G2505A microarray scanner.

    BAC Assay:

    Article Title: CGHpower: exploring sample size calculations for chromosomal copy number experiments
    Article Snippet: .. They will be referred to as Chin et al. [ ], Douglas et al. [ ], Fridlyand et al. [ ], Myllykangas et al. [ ], Nymark et al. [ ], Postma et al. [ ], Smeets et al. [ ] and Wrage et al. [ ] A total of five different array types were used among the data sets: VUmc 30 K spotted oligo [ ] for data sets [ , , ], Agilent Human 1 cDNA Microarray for [ , ], 3 K BAC array [ ] for [ ], 2 K BAC array [ ] for [ ] and 6 K BAC array for [ ]. ..

    Sequencing:

    Article Title: Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
    Article Snippet: .. In a recent study, we compared several Affymetrix platforms (for which probe sequence information was available) to the Agilent Human 1 cDNA microarray platform [ ]. .. Probe sequence information was unavailable for the Agilent platform except for a 100 base lead sequence at one end of each cDNA probe.

    Hybridization:

    Article Title: Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer
    Article Snippet: .. Copy number variation data for primary ovarian tumors was downloaded from TCGA ( http://tcga.cancer.gov/ ) and CBS data files from the Agilent SurePrint G3 Human 1 M CGH (Comparative Genomic Hybridization) Microarray with the label mskcc.org_OV.CGH-1×1M_G4447A were analyzed. ..



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