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Simplot Science bootscanning simplot
Bootscanning Simplot, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bootscanning+simplot/bootscanning+analysis+simplot+3+5+1/pm39447682-16-6-2
Average 90 stars, based on 1 article reviews
bootscanning simplot - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Multiple CRF01_AE/CRF07_BC Recombinants Enhanced the HIV-1 Epidemic Complexity Among MSM in Shenyang City, Northeast China
Article Snippet: Recombination fragments (as determined using jpHMM and Simplot bootscanning) were phylogenetically studied using IQ-Tree v2.0.5.

Article Title: Genetic Dynamic Analysis of the Influenza A H5N1 NS1 Gene in China
Article Snippet: For each sample, the eight gene segment alignments were manually concatenated in the order of their length to generate a single alignment of full genome sequences, and the resulting alignment was analyzed using the bootscanning method implemented in the SimPlot v3.5.1 .

Article Title: Identification of a novel CRF01_AE/CRF07_BC (CRF163_0107) circulating recombinant form in Shenyang city, the economic center of Northeast China.
Article Snippet: Bootscanning in Simplot (version 3.5.1) and RIP online tools(RIP 3.0 submission form (lanl.gov)) analyses were used to identify the recombination patterns.

Article Title: Phylodynamics of HIV-1 Circulating Recombinant Forms 12_BF and 38_BF in Argentina and Uruguay
Article Snippet: Two strategies were used to characterize the HIV-1 pol sequences used in the present study as CRF12_BF-like or CRF38_BF-like recombinants: 1) First, the recombination breakpoints of each sequence were identified by Bootscanning using Simplot version 3.5.1 [ ].

Article Title: Phylodynamics of HIV-1 Subtype C Epidemic in East Africa
Article Snippet: Putative intrasubtype C/C′ recombinant sequences in Ethiopia were identified by Bootscanning using Simplot version 3.5.1 , following the same procedure described by Pollakis et al . Bootstrap values supporting branching with reference sequences were determined in Neighbor-Joining (NJ) trees constructed using the K2-P nucleotide substitution model, based on 100 re-samplings, with a 300 bp sliding window moving in steps of 10 bases.

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Article Title: HIV-1 genetic diversity and transmitted drug resistance among newly diagnosed HIV-1 individuals in Jiangmen, China.
Article Snippet: Correspondence Guifang Hu, School of Public Health, Southern Medical University, No.1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong 510515, China Telephone number: +86-18933940199 E-mail: guif_hu@sina.com Funding information Guangdong Province Public Welfare Research and Capacity Building Project, Grant number: 2014B020212007; Guangzhou Science and Technology Project, Grant number: 201508020018



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