bbduck (SourceForge net)
90
Structured Review
SourceForge net
bbduck
Bbduck, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+function+in+bbmap+tool/bbduck/pmc11411797-103-12-14
Average 90 stars, based on 1 article reviews
Bbduck, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+function+in+bbmap+tool/bbduck/pmc11411797-103-12-14
Average 90 stars, based on 1 article reviews
bbduck - by Bioz Stars,
2026-10
90/100 stars
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other:Article Title: Dynamic Development of Viral and Bacterial Diversity during Grass Silage Preservation. Article Snippet: Metagenomic raw reads, ~100 Gb of data, were quality-controlled using Article Title: Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism Article Snippet: The resulting reads were quality filtered using Article Title: Mitogenomes revealed the history of bison colonization of Northern Plains after the Last Glacial Maximum Article Snippet: First, DNA reads were processed with Article Title: The Mitochondrial Genome of a Plant Fungal Pathogen Pseudocercospora fijiensis (Mycosphaerellaceae), Comparative Analysis and Diversification Times of the Sigatoka Disease Complex Using Fossil Calibrated Phylogenies Article Snippet: Reads were quality filtered and trimmed using BBDuck from BBtools ( https://sourceforge.net/projects/bbmap/ (accessed on 10 February 2021)) before carrying out transcriptome de novo assemblies with Trinity version 2.3.1 [ ]. Article Title: Rapid vertebrate speciation via isolation, bottlenecks, and drift Article Snippet: Briefly, this Sequencing:Article Title: Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments Article Snippet: Final library pools were sequenced using NextSeq 500 High Output kit v2.5 (Illumina) on an Illumina NextSeq 550 sequencer. .. Reads from NextSeq sequencing of metagenomic DNA were trimmed and quality-filtered using Article Title: Gut microbiome and obesity in late adolescence: A case-control study in "Children of 1997" birth cohort. Article Snippet: Purpose: Although the gut microbiome is important in human health, its relation to adolescent obesity remains unclear.. Here we assessed the associations of the gut microbiome with adolescent obesity in a case-control study.. Methods: In the “Children of 1997” birth cohort, participants with and without obesity at ~17.4 years were 1:1 matched on sex, physical activity, parental education and occupation (n = 312). Software:Article Title: Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study Article Snippet: The libraries were sequenced using an Illumina NovaSeq 6000 system PE150, according to a 350 bp library type and to standard Illumina operation procedures with a yield of > 8 Gb per lane and median phred quality score of Q36. .. BBDuck function, from |