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SourceForge net bbduk function in bbmap tool
Bbduk Function In Bbmap Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+function+in+bbmap+tool/bbmap+package+bbduk/pmc10238436-71-33-38
Average 90 stars, based on 1 article reviews
bbduk function in bbmap tool - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Complete genome sequence of a novel Acinetobacter spp. linked to an outbreak of sepsis following apheresis platelet transfusion.
Article Snippet: Raw sequences were processed with BBDuk (BBMap v.38.26 https://sourceforge.net/projects/bbmap/) to remove PhiX (parameters: k = 32, hdist = 1, ref = phiX.fa [4]), then Trimmomatic v.0.35 (5) (parameters: ILLUMI NACLIP:adapters.fasta:2:30:10:8:TRUE SLIDINGWINDOW:20:30 LEADING:20 TRAILING:20 MINLEN:50) to remove adapters and trim for quality (Table 1).

Article Title: Machine learning-optimized targeted detection of alternative splicing
Article Snippet: For all analyzed LSV-seq and RNA-seq datasets, reads were first trimmed with BBDuk of BBMap (sourceforge.net/projects/bbmap/) using the parameters {ref=adapters ktrim=r k=23 mink=11 hdist=1 tpe tbo qtrim=r trimq=15 qin=auto minlength=30}.

Article Title: The extra-terminal domain drives the role of BET proteins in transcription
Article Snippet: Briefly, reads were preprocessed using bbduk (BBMap version 39.06) ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Mitochondrial genome fragmentation is correlated with increased rates of molecular evolution.
Article Snippet: We conducted a quality check on the raw data from all 90 samples using FastQC v0.11.9 (https:// www.bioinformatics.babraham.ac.uk/projects/fastqc/) and trimmed the reads using BBDuK from the BBMap package (https://sourceforge.net/projects/bbmap/, setup ktrim = r k = 23 mink = 7 hdist = 1 tpe tbo maq = 10 qtrim = rl trimq = 35 minlength = 35).

Article Title: The genomic distribution of transposable elements is driven by spatially variable purifying selection
Article Snippet: To increase physical coverage (i.e. the number of paired reads spanning a genomic site, where only the inner distance is considered) , we clipped the quality-trimmed reads to a maximum read length of 75 bp using the program BBDuk of BBMap (v38.87; sourceforge.net/projects/bbmap).

Article Title: Supporting Information for Type I interferon signaling pathway enhances immune-checkpoint inhibition in KRAS mutant lung tumors
Article Snippet: Subsequently, polyA tails and adapters were removed using BBDuk (BBMap version 38.90-3) (https://sourceforge.net/projects/bbmap/).

RNA Sequencing:

Article Title: Decreased left heart flow in fetal lambs causes left heart hypoplasia and pro-fibrotic tissue remodeling.
Article Snippet: .. BBDuk (BBMap suite v37.90) (https://sourceforge.net/projects/ bbmap/) was used to trim adapter sequences from reads with reference adapter sequences provided by BBMap suite and settings “hdist=1 mink=11” for small RNA-seq reads. ..

Sequencing:

Article Title: De novo transcriptome assembly and gene annotation for the toxic dinoflagellate Dinophysis
Article Snippet: .. Raw sequence reads in fastq format were processed to remove adapters, poly-N (⩾10% read length), low-quality bases (Phred score < 10) and the last 10 bases were trimmed using the bbduk function in BBMap tool v. 38.90 ( https://sourceforge.net/projects/bbmap/ ). ..



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SourceForge net bbduk function in bbmap tool
Bbduk Function In Bbmap Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+function+in+bbmap+tool/bbmap+package+bbduk/pmc10238436-71-33-38
Average 90 stars, based on 1 article reviews
bbduk function in bbmap tool - by Bioz Stars, 2026-09
90/100 stars
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