Magnetic Resonance Imaging:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
Starch:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
Gas Chromatography:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
Gene Expression:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
Quantitative RT-PCR:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
SYBR Green Assay:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
Real-time Polymerase Chain Reaction:Article Title: Magnetic resonance imaging, water relation, gene expression and biochemical data for analysis of the effects of water stress on potato plant functioning and tuber development and quality
Article Snippet: .. Data collection , MRI images: 1.5 T scanner (Avanto, Siemens). Software: SYNGO (Siemens, version VB17) for image acquisition and Avizo 3D Pro (FEI Company, version 2021.2) for image processing. Electronic precision balance (0.1 mg) (leaf water deficit and tuber fresh weight), WP4C dewpoint potential meter (leaf water potential), Horiba LAQUAtwin-pH-22 m (tuber pH) and Ag/AgCl reference electrode radiometer analytical E21M002 and radiometer analytical platinum plate electrode, with a Voltcraft VC850 multimeter (tuber Eh). Microplate reader (starch analysis after enzymatic digestion); Agilent technology gas chromatography system (sugar analysis). Leaf gene expression: qRT-PCR using a Universal SYBR Green Supermix (Bio-Rad) in a real-time PCR detection system (Bio-Rad).. .. Data source location , Potato plants were grown under semi-controlled conditions in a greenhouse at UMR IGEPP, INRAE, Le Rheu, France (X: 48.099998; Y: −1.8). MRI raw data were collected at UR OPAALE, INRAE, Rennes, France (X: 48.1282588; Y: −1.7007542). Leaf water relations were measured at UR OPAALE while tuber biochemistry was performed at UMR IGEPP, except starch analyzes which was done at UR PSH, INRAE Avignon (X:43.91539, Y:4.87846). Gene expression data were collected at CMI, Saint Malo, France (X: 48.643017; Y: −2.009258)..
Software:
Article Title: A machine learning approach for age prediction based on trigeminal landmarks.
Article Snippet: Objective: The aim of this study was to estimate the chronological age (CA) of a growing individual using a new machine learning approach on Cone Beam Computed Tomography (CBCT).. Materials and methods: The dataset included 48 CBCT and hand-wrist radiographs of growing individuals.. 12 landmarks related to trigeminal trajectories were plotted on each CBCT and principal component analysis was applied for dimensionality reduction.
Article Title: Imaging genomics reveals genetic architecture of the globular human braincase
Article Snippet: .. We first used semi-automated segmentation to create virtual endocranial imprints in the software Avizo 3D (Version 9; FEI SAS, Thermo Fisher Scientific) following protocols detailed in Neubauer et al. , . ..
other:Article Title: Synchrotron Tomography-Based Finite Element Analysis of Vertebral Endplate Loading Reveals Functional Roles for Architectural Features
Article Snippet: The reconstructed images were first binned by four using Avizo 3D (v. 2022.2, Thermo Fisher Scientific, Waltham, US).
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