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transcriptome microarray mouse sentrix-6 v2 whole genome bead chip  (Illumina Inc)


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    Structured Review

    Illumina Inc transcriptome microarray mouse sentrix-6 v2 whole genome bead chip
    Establishment of mouse RILF model and analysis of <t>transcriptome</t> <t>microarray</t> data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.
    Transcriptome Microarray Mouse Sentrix 6 V2 Whole Genome Bead Chip, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+transcriptome+microarray/transcriptome+microarray+mouse+sentrix+6+v2+whole+genome+bead+chip/pmc11440530-41-6-16
    Average 90 stars, based on 1 article reviews
    transcriptome microarray mouse sentrix-6 v2 whole genome bead chip - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Ferroptosis-Associated Extracellular Matrix Remodeling in Radiation-Induced Lung Fibrosis Progression"

    Article Title: Ferroptosis-Associated Extracellular Matrix Remodeling in Radiation-Induced Lung Fibrosis Progression

    Journal: Dose-Response

    doi: 10.1177/15593258241289829

    Establishment of mouse RILF model and analysis of transcriptome microarray data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.
    Figure Legend Snippet: Establishment of mouse RILF model and analysis of transcriptome microarray data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.

    Techniques Used: Microarray, Staining, Control, Irradiation, Gene Expression

    Related Articles

    Microarray:

    Article Title: Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors
    Article Snippet: .. The Illumina HT12 v4 microarray whole transcriptome gene expression data from the discovery cohort was analyzed stratified for ER status and RT, creating four groups (ER + RT+, ER + RT-, ER-RT+, ER-RT-). ..

    Article Title: Identification of biological pathways specific to phases preceding rheumatoid arthritis development through gene expression profiling.
    Article Snippet: 1Laboratoire de Mathématiques et Modélisation d'Evry, Université Paris-Saclay, CNRS, Univ Evry, Evry, France 2Centre National de Recherche en Génomique Humaine, CEA-Institut de Biologie François Jacob, Evry, France 3Laboratoire Européen de Recherche pour la Polyarthrite rhumatoïde Genhotel, Université Paris-Saclay, Univ Evry, Evry, France 4Division of Rheumatology, Geneva University Hospital, Geneva, Switzerland

    Article Title: Ferroptosis-Associated Extracellular Matrix Remodeling in Radiation-Induced Lung Fibrosis Progression
    Article Snippet: The RNA concentration was determined using a 2100 Bioanalyzer system (Agilent Technologies, Santa Clara, CA, USA) to confirm sample integrity and purity. .. Gene expression was detected using a transcriptome microarray (Mouse Sentrix-6 V2 Whole Genome Bead Chip, BD-201-0202; Illumina, Inc., San Diego, CA, USA). ..

    Transcriptome Wide Gene Expression:

    Article Title: Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors
    Article Snippet: .. The Illumina HT12 v4 microarray whole transcriptome gene expression data from the discovery cohort was analyzed stratified for ER status and RT, creating four groups (ER + RT+, ER + RT-, ER-RT+, ER-RT-). ..

    Sequencing:

    Article Title: Genetic and environmental factors of schizophrenia and autism spectrum disorder: insights from twin studies
    Article Snippet: Fisher et al. ( ) , Childhood psychotic symptoms , Epigenetics , Detection of differentially methylated positions associated with psychotic symptoms , 18 pairs at age 5 and 24 pairs at age 10 , Genome-wide methylation analysis (Infinium HumanMethylation450) BeadChip array , (+ −). .. Lyu et al. ( ) , SCZ , Genetics , Exploration of the novel pathogenic somatic single nucleotide variations and somatic insertions and deletions (indels) , 1 , Whole exome sequencing (Illumina HiSeq2500 sequencing platform) , (−). .. Morimoto et al. ( ) , SCZ, ASD, GID , Genetics , Identification of discordant variants including somatic mosaic mutations , SCZ3, ASD1, GID1 , Deep sequencing analysis (Illumina HiSeq2500) , (+ −) in GID.

    Article Title: Gene Mutations Related to Glucocorticoid Resistance in Pediatric Acute Lymphoblastic Leukemia
    Article Snippet: .. Whole exome gene sequencing was performed to screen gene mutations via the ALL DNA whole exome sequencing gene chip (Illumina) on an Illumina sequencer (Illumina Nextseq500, US). ..

    other:

    Article Title: Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors
    Article Snippet: Genes predicting ipsilateral breast tumor recurrence in an Illumina HT12 v4 whole transcriptome analysis were combined with genes identified in the literature (248 genes in total) to develop a targeted radiosensitivity assay on the Nanostring nCounter platform.

    Article Title: Transcriptome profiles in brains of mice heterozygous for a DYT1 dystonia-associated mutation in the endogenous Tor1a gene
    Article Snippet: The transcriptome was analyzed using the Illumina Whole-Genome Gene Expression microarray system (Illumina, San Diego, CA, USA) in a one-color labeling scheme.

    Article Title: Two Distinct Subtypes Revealed in Blood Transcriptome of Breast Cancer Patients With an Unsupervised Analysis
    Article Snippet: The whole blood transcriptome was quantified by Illumina Human AWG-6 and HT12, including microarray expression data for 16,782 genes ( ).

    Gene Expression:

    Article Title: Ferroptosis-Associated Extracellular Matrix Remodeling in Radiation-Induced Lung Fibrosis Progression
    Article Snippet: The RNA concentration was determined using a 2100 Bioanalyzer system (Agilent Technologies, Santa Clara, CA, USA) to confirm sample integrity and purity. .. Gene expression was detected using a transcriptome microarray (Mouse Sentrix-6 V2 Whole Genome Bead Chip, BD-201-0202; Illumina, Inc., San Diego, CA, USA). ..



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    Image Search Results


    Establishment of mouse RILF model and analysis of transcriptome microarray data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.

    Journal: Dose-Response

    Article Title: Ferroptosis-Associated Extracellular Matrix Remodeling in Radiation-Induced Lung Fibrosis Progression

    doi: 10.1177/15593258241289829

    Figure Lengend Snippet: Establishment of mouse RILF model and analysis of transcriptome microarray data analysis. (A) HE and masson staining of lung tissue collected at 20 weeks after IR (control, 17 Gy). Lungs treated to 17 Gy dose irradiation develop foci of fibrosis. Collagen: blue; cytoplasm/epithelia: pink. Scale bar = 20 μm. (B) The PCA plot of the distribution status of the two groups (C) Volcano plots displaying significantly differentially expressed genes. |log2FC| ≥ 0.5 and P < 0.05. (D) Heatmap displaying the expressions of the DEGs. Blue corresponds to lower gene expression and red to higher gene expression. (E) Bar plot of enriched KEGG pathways/GO terms showing DEGs.

    Article Snippet: Gene expression was detected using a transcriptome microarray (Mouse Sentrix-6 V2 Whole Genome Bead Chip, BD-201-0202; Illumina, Inc., San Diego, CA, USA).

    Techniques: Microarray, Staining, Control, Irradiation, Gene Expression