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visium arrays  (Spatial Transcriptomics Inc)

 
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    Spatial Transcriptomics Inc visium arrays
    a Haematoxylin and eosin staining of the slides in the <t>Visium</t> arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 <t>slide)</t> <t>endometrium.</t>
    Visium Arrays, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/visium arrays/product/Spatial Transcriptomics Inc
    Average 86 stars, based on 1 article reviews
    visium arrays - by Bioz Stars, 2026-05
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    Images

    1) Product Images from "Single-cell sequencing uncovers disrupted stromal-macrophage communication as a driver of intrauterine adhesion progression"

    Article Title: Single-cell sequencing uncovers disrupted stromal-macrophage communication as a driver of intrauterine adhesion progression

    Journal: Communications Biology

    doi: 10.1038/s42003-025-08634-3

    a Haematoxylin and eosin staining of the slides in the Visium arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 slide) endometrium.
    Figure Legend Snippet: a Haematoxylin and eosin staining of the slides in the Visium arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 slide) endometrium.

    Techniques Used: Staining



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    a Haematoxylin and eosin staining of the slides in the <t>Visium</t> arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 <t>slide)</t> <t>endometrium.</t>
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    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 <t>×</t> <t>Genomics</t> <t>Visium</t> platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.
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    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 <t>×</t> <t>Genomics</t> <t>Visium</t> platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.
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    Image Search Results


    a Haematoxylin and eosin staining of the slides in the Visium arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 slide) endometrium.

    Journal: Communications Biology

    Article Title: Single-cell sequencing uncovers disrupted stromal-macrophage communication as a driver of intrauterine adhesion progression

    doi: 10.1038/s42003-025-08634-3

    Figure Lengend Snippet: a Haematoxylin and eosin staining of the slides in the Visium arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 slide) endometrium.

    Article Snippet: Fig. 9 Spatial transcriptomics reveals regional distribution of stromal and macrophage subpopulations in human endometrium. a Haematoxylin and eosin staining of the slides in the Visium arrays from Alonso et al. Two individuals were selected: proliferative phase A13 and secretory phase A30. b , c Estimated amount of mRNA (color intensity) contributed by each stromal cell population ( b ), macrophage subsets ( c ) to each spot (color) shown over the H&E image of proliferative (A13, 152810 slide and 152806 slide) and secretory (A30, 152811 slide and152807 slide) endometrium.

    Techniques: Staining

    Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 × Genomics Visium platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.

    Journal: Phytomedicine : international journal of phytotherapy and phytopharmacology

    Article Title: Spatially resolved multi-omics reveals the renal cortex-metabolic reprogramming of Shenhua Tablet for intervention on IgA nephropathy.

    doi: 10.1016/j.phymed.2025.156742

    Figure Lengend Snippet: Fig. 5. SHT regulates genes expression in renal outer CTX. (A) The experimental design of spatial multi-omics. (B) UMAP dimensionality reduction of spatially resolved transcriptomic spots to visualize clusters. The x-axis and y-axis stand for PC1 and PC2 of UMAP dimensionality reduction in the above figure. Every point in the panel symbolizes a spot. Different colored spots represent different groups. Following the color of the above figure, the below panel depicts the precise spatial distribution of various clusters in the tissue slice of each sample. (C) The heatmap showing the relative intensities of differential gene expression in the outer CTX, inner CTX, outer MDLA, and inner MDLA across the three experimental groups. (D) Oat of tissue map in situ based on 10 × Genomics Visium platform. (E) IHC showing the distribution of Odc1 in renal outer CTX of rats in the three experimental groups. Scale, 50 µm.

    Article Snippet: Two adjacent slices were placed on the SUPERFROST PLUS slides (Thermo Fisher, the USA) and 10 × Genomics Visium array slides (https://www.10xgenomics.co m/) for spatial metabolomics and transcriptomics analyses, respectively.

    Techniques: Expressing, Biomarker Discovery, Gene Expression, In Situ

    Fig. 6. SHT regulates the transcriptional heterogeneity of glomeruli and renal tubules in the outer CTX. (A) UMAP and in situ image showing the spatial distribution of diseased and normal glomeruli and renal tubules in the renal outer CTX of rats in the three group samples. (B) Spatial images and expression levels of G6pc1, Pck1, and Gpx3 in glomeruli based on 10x Genomics Visium platform. (C) The correlation analysis showing the negative correlation between G6pc1 and ascorbic acid, whereas the positive correlation between Gpx3 and NAD in renal tubules. The graph below displaying the spatial distribution of ascorbic acid and NAD. (D) Spatial images and expression levels of Gclc, Gpx3, and Oat in glomeruli based on 10x Genomics Visium platform.

    Journal: Phytomedicine : international journal of phytotherapy and phytopharmacology

    Article Title: Spatially resolved multi-omics reveals the renal cortex-metabolic reprogramming of Shenhua Tablet for intervention on IgA nephropathy.

    doi: 10.1016/j.phymed.2025.156742

    Figure Lengend Snippet: Fig. 6. SHT regulates the transcriptional heterogeneity of glomeruli and renal tubules in the outer CTX. (A) UMAP and in situ image showing the spatial distribution of diseased and normal glomeruli and renal tubules in the renal outer CTX of rats in the three group samples. (B) Spatial images and expression levels of G6pc1, Pck1, and Gpx3 in glomeruli based on 10x Genomics Visium platform. (C) The correlation analysis showing the negative correlation between G6pc1 and ascorbic acid, whereas the positive correlation between Gpx3 and NAD in renal tubules. The graph below displaying the spatial distribution of ascorbic acid and NAD. (D) Spatial images and expression levels of Gclc, Gpx3, and Oat in glomeruli based on 10x Genomics Visium platform.

    Article Snippet: Two adjacent slices were placed on the SUPERFROST PLUS slides (Thermo Fisher, the USA) and 10 × Genomics Visium array slides (https://www.10xgenomics.co m/) for spatial metabolomics and transcriptomics analyses, respectively.

    Techniques: In Situ, Expressing