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massarray typeranalyzer software version 4.0  (Sequenom)

 
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    Sequenom massarray typeranalyzer software version 4.0
    Massarray Typeranalyzer Software Version 4.0, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/typeranalyzer+4%2E0+software/massarray+assay+design+3+0+software/pm36632909-69-20-25
    Average 90 stars, based on 1 article reviews
    massarray typeranalyzer software version 4.0 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: The HLA-B/-C haplotype block contains major determinants for host control of HIV
    Article Snippet: The spectra were viewed and analyzed using TyperAnalyzer 4.0 software from Sequenom.

    Article Title: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays
    Article Snippet: SNPflow is able to deal with results coming both from the Sequenom TyperAnalyzer 4.0 software and the ABI SDS software version 2.2.2, since these two platforms are present in our laboratory and we were thus able to implement SNPflow respectively.

    Multiplex Assay:

    Article Title: The HLA-B/-C haplotype block contains major determinants for host control of HIV
    Article Snippet: The spectra were viewed and analyzed using TyperAnalyzer 4.0 software from Sequenom.

    Article Title: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays
    Article Snippet: SNPflow is able to deal with results coming both from the Sequenom TyperAnalyzer 4.0 software and the ABI SDS software version 2.2.2, since these two platforms are present in our laboratory and we were thus able to implement SNPflow respectively.



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    Image Search Results


    This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.

    Journal: PLoS ONE

    Article Title: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays

    doi: 10.1371/journal.pone.0059508

    Figure Lengend Snippet: This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.

    Article Snippet: SNPflow is able to deal with results coming both from the Sequenom TyperAnalyzer 4.0 software and the ABI SDS software version 2.2.2, since these two platforms are present in our laboratory and we were thus able to implement SNPflow respectively.

    Techniques: Multiplex Assay