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triptolide  (Thermo Fisher)


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    Structured Review

    Thermo Fisher triptolide
    Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM <t>triptolide.</t> ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and <t>triptolide</t> (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.
    Triptolide, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/triptolide/Triptolide/pmc12988324-38-32-33
    Average 94 stars, based on 1 article reviews
    triptolide - by Bioz Stars, 2026-10
    94/100 stars

    Images

    1) Product Images from "Multiplexed TrAEL-seq captures DNA replication dynamics in mammalian cells"

    Article Title: Multiplexed TrAEL-seq captures DNA replication dynamics in mammalian cells

    Journal: Nucleic Acids Research

    doi: 10.1093/nar/gkag212

    Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM triptolide. ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and triptolide (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.
    Figure Legend Snippet: Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM triptolide. ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and triptolide (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.

    Techniques Used: Activity Assay

    Related Articles

    Multiple Displacement Amplification:

    Article Title: The emerging role of mitochondria in the pharmacological and toxicological effects of Tripterygium wilfordii Hook F: functions, targets and new therapeutic applications
    Article Snippet: Triptolide , Liposome , 133 nm , 62.67 ± 4.59% , 0.76 ± 0.01% , Pan02; C57BL/6 J mice , Amphiphilic stachydrine-octadecane conjugate, polyethylene glycol, liposome surfaces, triptolide , A liposome-based delivery system with mitochondria-targeting capability for enhanced pancreatic cancer therapy , [ ] . .. , Nano-hydrogel , 80.87 ± 0.52 nm , 83.52% , 4.52% , HUVECs, MDA-MB-231, MCF-7, 4T1; BALB/c mice , Poly (N-isopropylacrylamide-co-acrylic acid), p(NIPAAm-co-AAc)-g-F68 copolymer, triptolide , A thermo-sensitive hydrogel that enhances levels of mitochondrial apoptosis and inhibits tumor angiogenesis , [ ] . ..

    Mouse Assay:

    Article Title: The emerging role of mitochondria in the pharmacological and toxicological effects of Tripterygium wilfordii Hook F: functions, targets and new therapeutic applications
    Article Snippet: Triptolide , Liposome , 133 nm , 62.67 ± 4.59% , 0.76 ± 0.01% , Pan02; C57BL/6 J mice , Amphiphilic stachydrine-octadecane conjugate, polyethylene glycol, liposome surfaces, triptolide , A liposome-based delivery system with mitochondria-targeting capability for enhanced pancreatic cancer therapy , [ ] . .. , Nano-hydrogel , 80.87 ± 0.52 nm , 83.52% , 4.52% , HUVECs, MDA-MB-231, MCF-7, 4T1; BALB/c mice , Poly (N-isopropylacrylamide-co-acrylic acid), p(NIPAAm-co-AAc)-g-F68 copolymer, triptolide , A thermo-sensitive hydrogel that enhances levels of mitochondrial apoptosis and inhibits tumor angiogenesis , [ ] . ..

    Transcriptomics:

    Article Title: Triptolide clears Staphylococcus aureus infection by targeting XIAP to induce host apoptosis while maintaining gut microbiota homeostasis
    Article Snippet: Slides were scanned using Aperio Versa 200 (Leica Biosystems) and quantitation of the cleaved caspase-3-positive cells in each lung section was performed using Imaris 9.6 (Bitplane; https://imaris.oxinst.com/ ). .. For transcriptomics analysis, total RNA was extracted from iBMDMs infected with SA and treated with DMSO or triptolide, and from lung macrophages of mice infected with SA or MRSA treated with PBS, triptolide, or methicillin according to the TRIzol® manual (Life Technologies, 15596-026). .. RNA sequencing was conducted using the Illumina Novaseq 6000 platform with paired-end 150-bp reads.

    Infection:

    Article Title: Triptolide clears Staphylococcus aureus infection by targeting XIAP to induce host apoptosis while maintaining gut microbiota homeostasis
    Article Snippet: Slides were scanned using Aperio Versa 200 (Leica Biosystems) and quantitation of the cleaved caspase-3-positive cells in each lung section was performed using Imaris 9.6 (Bitplane; https://imaris.oxinst.com/ ). .. For transcriptomics analysis, total RNA was extracted from iBMDMs infected with SA and treated with DMSO or triptolide, and from lung macrophages of mice infected with SA or MRSA treated with PBS, triptolide, or methicillin according to the TRIzol® manual (Life Technologies, 15596-026). .. RNA sequencing was conducted using the Illumina Novaseq 6000 platform with paired-end 150-bp reads.

    Incubation:

    Article Title: Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments
    Article Snippet: .. Cells were washed once with PBS and fed fresh 2i-free medium containing 1 μM triptolide, incubated for 45 min or for 4 hours, and then harvested. . Crosslinking Cells were doubly crosslinked to fix protein-protein and protein-DNA interactions using DSG (disuccinimidyl glutarate, 7.7Å) (ThermoFisher #20593) and formaldehyde (ThermoFisher #28906), respectively. .. Crosslinking medium was prepared by diluting freshly made DSG stock solution (300 mM DSG in DMSO) to 3 mM in 1X PBS (ThermoFisher #10010031).

    Isolation:

    Article Title: Multiplexed TrAEL-seq captures DNA replication dynamics in mammalian cells.
    Article Snippet: .. Hydroxyurea (Merck H78627) was used at 20 –100 μM for 2 h, Ceralasertib (Merck TA9H11E41972) at 1 μM for 24 h, palbociclib (Thermo Fisher Scientific 16430568) at 16 nM for 24 h, triptolide (Thermo Fisher Scientific PG490) at 3 μM for 4 h. M S I t ( t ( f p K B d p t p s × 1 β c n E C w t ( A b r o a w T M s ( / G C / G C / G C / G C / G C / D ow nloaded from https://academ ic.oup.com /nar/article/54/5/gkag212/8521934 by guest on 15 M arch 2026 ouse B-cell cultures pleens were isolated from C57Bl6 wild-type and Activationnduced Demaminase (AID) knock-out mice obtained from he European Conditional Mouse Mutagenesis Program Aicda tm1a (EUCOMM)Hmgu ). ..

    Knock-Out:

    Article Title: Multiplexed TrAEL-seq captures DNA replication dynamics in mammalian cells.
    Article Snippet: .. Hydroxyurea (Merck H78627) was used at 20 –100 μM for 2 h, Ceralasertib (Merck TA9H11E41972) at 1 μM for 24 h, palbociclib (Thermo Fisher Scientific 16430568) at 16 nM for 24 h, triptolide (Thermo Fisher Scientific PG490) at 3 μM for 4 h. M S I t ( t ( f p K B d p t p s × 1 β c n E C w t ( A b r o a w T M s ( / G C / G C / G C / G C / G C / D ow nloaded from https://academ ic.oup.com /nar/article/54/5/gkag212/8521934 by guest on 15 M arch 2026 ouse B-cell cultures pleens were isolated from C57Bl6 wild-type and Activationnduced Demaminase (AID) knock-out mice obtained from he European Conditional Mouse Mutagenesis Program Aicda tm1a (EUCOMM)Hmgu ). ..

    Mutagenesis:

    Article Title: Multiplexed TrAEL-seq captures DNA replication dynamics in mammalian cells.
    Article Snippet: .. Hydroxyurea (Merck H78627) was used at 20 –100 μM for 2 h, Ceralasertib (Merck TA9H11E41972) at 1 μM for 24 h, palbociclib (Thermo Fisher Scientific 16430568) at 16 nM for 24 h, triptolide (Thermo Fisher Scientific PG490) at 3 μM for 4 h. M S I t ( t ( f p K B d p t p s × 1 β c n E C w t ( A b r o a w T M s ( / G C / G C / G C / G C / G C / D ow nloaded from https://academ ic.oup.com /nar/article/54/5/gkag212/8521934 by guest on 15 M arch 2026 ouse B-cell cultures pleens were isolated from C57Bl6 wild-type and Activationnduced Demaminase (AID) knock-out mice obtained from he European Conditional Mouse Mutagenesis Program Aicda tm1a (EUCOMM)Hmgu ). ..

    Imaging:

    Article Title: Individual transcription factors modulate both the micromovement of chromatin and its long-range structure
    Article Snippet: .. To evaluate the effect of transcription initiation and elongation on chromatin mobility in living cells, 500nM triptolide or 5μg/mL actinomycin D (Sigma-Aldrich) was added to the imaging medium (FluoroBrite DMEM, ThermoFisher) for few minutes before imaging, respectively. ..

    Single Cell:

    Article Title: Timed microglia depletion promotes functional network reorganization and motor recovery after stroke
    Article Snippet: .. For single-cell sequencing, mice were terminally anesthetized as described above, with PBS containing Actinomycin D (5 μg/mL, Carl Roth, 8969.1) and Triptolide (10 μM, Thermo Fisher, 466840250) added during perfusion to inhibit gene expression during tissue processing. .. Brains were removed, and the ipsilesional cortex dissected and digested in Papain solution (Worthington, LK003176 ) containing Actinomycin D (5 μg/mL), Triptolide (10 μM), and Anisomycin (27.1 μg/mL, Sigma-Aldrich, A9789) for 20 min at 37°C.

    Sequencing:

    Article Title: Timed microglia depletion promotes functional network reorganization and motor recovery after stroke
    Article Snippet: .. For single-cell sequencing, mice were terminally anesthetized as described above, with PBS containing Actinomycin D (5 μg/mL, Carl Roth, 8969.1) and Triptolide (10 μM, Thermo Fisher, 466840250) added during perfusion to inhibit gene expression during tissue processing. .. Brains were removed, and the ipsilesional cortex dissected and digested in Papain solution (Worthington, LK003176 ) containing Actinomycin D (5 μg/mL), Triptolide (10 μM), and Anisomycin (27.1 μg/mL, Sigma-Aldrich, A9789) for 20 min at 37°C.

    Gene Expression:

    Article Title: Timed microglia depletion promotes functional network reorganization and motor recovery after stroke
    Article Snippet: .. For single-cell sequencing, mice were terminally anesthetized as described above, with PBS containing Actinomycin D (5 μg/mL, Carl Roth, 8969.1) and Triptolide (10 μM, Thermo Fisher, 466840250) added during perfusion to inhibit gene expression during tissue processing. .. Brains were removed, and the ipsilesional cortex dissected and digested in Papain solution (Worthington, LK003176 ) containing Actinomycin D (5 μg/mL), Triptolide (10 μM), and Anisomycin (27.1 μg/mL, Sigma-Aldrich, A9789) for 20 min at 37°C.

    Tissue:

    Article Title: Timed microglia depletion promotes functional network reorganization and motor recovery after stroke
    Article Snippet: .. For single-cell sequencing, mice were terminally anesthetized as described above, with PBS containing Actinomycin D (5 μg/mL, Carl Roth, 8969.1) and Triptolide (10 μM, Thermo Fisher, 466840250) added during perfusion to inhibit gene expression during tissue processing. .. Brains were removed, and the ipsilesional cortex dissected and digested in Papain solution (Worthington, LK003176 ) containing Actinomycin D (5 μg/mL), Triptolide (10 μM), and Anisomycin (27.1 μg/mL, Sigma-Aldrich, A9789) for 20 min at 37°C.



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    Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM <t>triptolide.</t> ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and <t>triptolide</t> (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.
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    Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM <t>triptolide.</t> ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and <t>triptolide</t> (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.
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    Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM triptolide. ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and triptolide (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.

    Journal: Nucleic Acids Research

    Article Title: Multiplexed TrAEL-seq captures DNA replication dynamics in mammalian cells

    doi: 10.1093/nar/gkag212

    Figure Lengend Snippet: Causes of replication fork processivity differences across the genome. ( A ) Metaplot of TrAEL-seq read count in DLD-1 cells averaged across genes ± 100 kb. Genes are stratified for transcriptional activity based on PRO-seq into 0%–40%, 40–70%, 70%–90%, and 90%–100% categories. Profiles were normalized individually to make background read counts as close as possible. ( B ) Plots of total TrAEL-seq read count at increasing distance from replication Initiation Zones, stratified for nascent transcription level by PRO-seq. Analysis was performed as in Fig. , but the genomic windows included were filtered to remove the top 25%, 50%, or 75% of regions based on PRO-seq read count. ( C ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells or cells treated for 2 h with 100 µM DRB or for 4 h with 3 µM triptolide. ( D ) Metaplot of TrAEL-seq read count over genes ± 100 kb as in panel (A) in DLD-1 cells ± DRB and triptolide (datasets as in panel (C), data is an average of the two biological replicates shown). ( E ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated DLD-1 cells and cells treated for with 1 µM Cerelasertib for 24 h. ( F ) Total TrAEL-seq read count at increasing distance from replication Initiation Zones in untreated PC9 cells and cells treated for 24 h with 16 nM palbociclib.

    Article Snippet: Hydroxyurea (Merck H78627 ) was used at 20–100 μM for 2 h, Ceralasertib (Merck TA9H11E41972) at 1 μM for 24 h, palbociclib (Thermo Fisher Scientific 16430568) at 16 nM for 24 h, triptolide (Thermo Fisher Scientific PG490) at 3 μM for 4 h.

    Techniques: Activity Assay