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custom-made scripts in matlab software version 7.11.0  (MathWorks Inc)


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    MathWorks Inc custom-made scripts in matlab software version 7.11.0
    Custom Made Scripts In Matlab Software Version 7.11.0, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/software+matlab+7%2E11%2E0/pmc09592183-136-3-11
    Average 90 stars, based on 1 article reviews
    custom-made scripts in matlab software version 7.11.0 - by Bioz Stars, 2026-09
    90/100 stars

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    custom-made scripts in matlab software version 7.11.0  (MathWorks Inc)
    90
    MathWorks Inc custom-made scripts in matlab software version 7.11.0
    Custom Made Scripts In Matlab Software Version 7.11.0, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/software+matlab+7%2E11%2E0/pmc09592183-136-3-11
    Average 90 stars, based on 1 article reviews
    custom-made scripts in matlab software version 7.11.0 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    matlab 7.11.0 software  (MathWorks Inc)
    90
    MathWorks Inc matlab 7.11.0 software
    Circular dichroism spectra and EMSA corresponding to DNA and RNA CGG sequences. ( A – F ) CD spectra and ( G – I ) PAGE showing the preference for the following conformations by DG1, DG5, DG6, RG1, RG5, and RG6: ( A ) B-form duplex (0.05 M KCl)/intermediate conformation (3 M KCl) (DG1), ( B , C , G , H ) intermolecular quadruplex (DG5 and DG6), ( D ) A-form duplex (RG1) and ( E , F , I ) intramolecular quadruplex (RG5 and RG6). ( J ) Schematic diagram illustrating the arrangement of G- and C-quadrats (taken from PDB ID: 1EVO) in a parallel RNA and DNA CGG quadruplex. This figure was generated by using pymol 1.3 ( www.pymol.com ). The arrows indicate the increase or decrease in the ellipticity concomitant with the change in the secondary structure (see the text for more details). The figures ( A – F ) were plotted by using <t>MATLAB</t> 7.11.0 software ( www.mathworks.com ). The EMSA ( G – I ) samples were analysed by 14% native PAGE and stained with ethidium bromide (EtBr). The unprocessed gel images ( G – I ) are incorporated in Supplementary Fig. A–C.
    Matlab 7.11.0 Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/software+matlab+7%2E11%2E0/pmc08046799-282-0-3
    Average 90 stars, based on 1 article reviews
    matlab 7.11.0 software - by Bioz Stars, 2026-09
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    Circular dichroism spectra and EMSA corresponding to DNA and RNA CGG sequences. ( A – F ) CD spectra and ( G – I ) PAGE showing the preference for the following conformations by DG1, DG5, DG6, RG1, RG5, and RG6: ( A ) B-form duplex (0.05 M KCl)/intermediate conformation (3 M KCl) (DG1), ( B , C , G , H ) intermolecular quadruplex (DG5 and DG6), ( D ) A-form duplex (RG1) and ( E , F , I ) intramolecular quadruplex (RG5 and RG6). ( J ) Schematic diagram illustrating the arrangement of G- and C-quadrats (taken from PDB ID: 1EVO) in a parallel RNA and DNA CGG quadruplex. This figure was generated by using pymol 1.3 ( www.pymol.com ). The arrows indicate the increase or decrease in the ellipticity concomitant with the change in the secondary structure (see the text for more details). The figures ( A – F ) were plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). The EMSA ( G – I ) samples were analysed by 14% native PAGE and stained with ethidium bromide (EtBr). The unprocessed gel images ( G – I ) are incorporated in Supplementary Fig. A–C.

    Journal: Scientific Reports

    Article Title: Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS

    doi: 10.1038/s41598-021-87097-y

    Figure Lengend Snippet: Circular dichroism spectra and EMSA corresponding to DNA and RNA CGG sequences. ( A – F ) CD spectra and ( G – I ) PAGE showing the preference for the following conformations by DG1, DG5, DG6, RG1, RG5, and RG6: ( A ) B-form duplex (0.05 M KCl)/intermediate conformation (3 M KCl) (DG1), ( B , C , G , H ) intermolecular quadruplex (DG5 and DG6), ( D ) A-form duplex (RG1) and ( E , F , I ) intramolecular quadruplex (RG5 and RG6). ( J ) Schematic diagram illustrating the arrangement of G- and C-quadrats (taken from PDB ID: 1EVO) in a parallel RNA and DNA CGG quadruplex. This figure was generated by using pymol 1.3 ( www.pymol.com ). The arrows indicate the increase or decrease in the ellipticity concomitant with the change in the secondary structure (see the text for more details). The figures ( A – F ) were plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). The EMSA ( G – I ) samples were analysed by 14% native PAGE and stained with ethidium bromide (EtBr). The unprocessed gel images ( G – I ) are incorporated in Supplementary Fig. A–C.

    Article Snippet: MATLAB 7.11.0 ( www.mathworks.com ) software was used for plotting the graphs.

    Techniques: Circular Dichroism, Generated, Software, Clear Native PAGE, Staining

    Schemes RC6 and RC5 that contain 6 & 5 C…C mismatches respectively, exhibit distortions in the double helix. ( A ) Time vs. RMSD profile showing significant conformational changes in RC6 (red color) and RC5 (green color) as indicated by a high RMSD value. This figure was plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). ( B , C ) Snapshots illustrating the distortions in the double helix caused by the conformational rearrangement of C…C mismatches in RC6 ( B ) and RC5 ( C ). Note that the unpaired cytosines are shown in circles. This figure was generated by using pymol 1.3 ( www.pymol.com ).

    Journal: Scientific Reports

    Article Title: Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS

    doi: 10.1038/s41598-021-87097-y

    Figure Lengend Snippet: Schemes RC6 and RC5 that contain 6 & 5 C…C mismatches respectively, exhibit distortions in the double helix. ( A ) Time vs. RMSD profile showing significant conformational changes in RC6 (red color) and RC5 (green color) as indicated by a high RMSD value. This figure was plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). ( B , C ) Snapshots illustrating the distortions in the double helix caused by the conformational rearrangement of C…C mismatches in RC6 ( B ) and RC5 ( C ). Note that the unpaired cytosines are shown in circles. This figure was generated by using pymol 1.3 ( www.pymol.com ).

    Article Snippet: MATLAB 7.11.0 ( www.mathworks.com ) software was used for plotting the graphs.

    Techniques: Software, Generated

    CCG RNA duplexes that contain 1 to 4 C…C mismatches are quite stable. ( A ) Time vs. RMSD profile showing less conformational changes in the RNA duplexes that contain one to four C…C mismatches. This figure was plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). Cartoon representation of the snapshots corresponding to (B) RC4 (4 C…C mismatches), ( C ) RC3 (3 C…C mismatches), ( D ) RC2 (2 C…C mismatches) and ( E ) RC1 (1 C…C mismatch). Orange colored base pairs represent C…C mismatches ( B – E ). This figure was generated by using pymol 1.3 ( www.pymol.com ).

    Journal: Scientific Reports

    Article Title: Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS

    doi: 10.1038/s41598-021-87097-y

    Figure Lengend Snippet: CCG RNA duplexes that contain 1 to 4 C…C mismatches are quite stable. ( A ) Time vs. RMSD profile showing less conformational changes in the RNA duplexes that contain one to four C…C mismatches. This figure was plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). Cartoon representation of the snapshots corresponding to (B) RC4 (4 C…C mismatches), ( C ) RC3 (3 C…C mismatches), ( D ) RC2 (2 C…C mismatches) and ( E ) RC1 (1 C…C mismatch). Orange colored base pairs represent C…C mismatches ( B – E ). This figure was generated by using pymol 1.3 ( www.pymol.com ).

    Article Snippet: MATLAB 7.11.0 ( www.mathworks.com ) software was used for plotting the graphs.

    Techniques: Software, Generated

    CCG DNA duplexes that contain 1 and 6 C…C mismatches are quite stable. ( A ) Time vs. RMSD profile corresponding to DNA duplexes that have one (green color) and six (red color) C…C mismatches. The MATLAB 7.11.0 software ( www.mathworks.com ) was used to plot the data. Note that the lower RMSD value of 4 Å indicates the stable nature of the duplexes. Snapshots corresponding to DNA duplexes that contain ( B ) one and ( C ) six C…C mismatches. This figure was generated by using pymol 1.3 ( www.pymol.com ).

    Journal: Scientific Reports

    Article Title: Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS

    doi: 10.1038/s41598-021-87097-y

    Figure Lengend Snippet: CCG DNA duplexes that contain 1 and 6 C…C mismatches are quite stable. ( A ) Time vs. RMSD profile corresponding to DNA duplexes that have one (green color) and six (red color) C…C mismatches. The MATLAB 7.11.0 software ( www.mathworks.com ) was used to plot the data. Note that the lower RMSD value of 4 Å indicates the stable nature of the duplexes. Snapshots corresponding to DNA duplexes that contain ( B ) one and ( C ) six C…C mismatches. This figure was generated by using pymol 1.3 ( www.pymol.com ).

    Article Snippet: MATLAB 7.11.0 ( www.mathworks.com ) software was used for plotting the graphs.

    Techniques: Software, Generated

    Circular dichroism spectra and EMSA corresponding to the DNA and RNA duplexes comprising of CCG repeats. ( A ) pH and ( B ) salt-dependent CD spectra showing the preference for duplex conformation by DC6 that contain 6 C…C mismatches. Preference for ( C , D ) i-motif like conformations by RC6 and RC5, and ( E ) A-form conformation by RC1. The figures ( A – E ) were plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). Gel picture corresponding to ( F ) DC6 and DC5 (lanes: 4, 5) and ( G ) RC5 (lane: 1), RC6 (lane: 2), and RC1 (lane: 3) sequences at pH 5 (left), pH 7 (middle), and pH 9 (right). The EMSA ( F , G ) samples were analyzed by 10% native PAGE and stained with Stains All dye. The unprocessed gel images ( F , G ) are incorporated in Supplementary Fig. D,E.

    Journal: Scientific Reports

    Article Title: Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS

    doi: 10.1038/s41598-021-87097-y

    Figure Lengend Snippet: Circular dichroism spectra and EMSA corresponding to the DNA and RNA duplexes comprising of CCG repeats. ( A ) pH and ( B ) salt-dependent CD spectra showing the preference for duplex conformation by DC6 that contain 6 C…C mismatches. Preference for ( C , D ) i-motif like conformations by RC6 and RC5, and ( E ) A-form conformation by RC1. The figures ( A – E ) were plotted by using MATLAB 7.11.0 software ( www.mathworks.com ). Gel picture corresponding to ( F ) DC6 and DC5 (lanes: 4, 5) and ( G ) RC5 (lane: 1), RC6 (lane: 2), and RC1 (lane: 3) sequences at pH 5 (left), pH 7 (middle), and pH 9 (right). The EMSA ( F , G ) samples were analyzed by 10% native PAGE and stained with Stains All dye. The unprocessed gel images ( F , G ) are incorporated in Supplementary Fig. D,E.

    Article Snippet: MATLAB 7.11.0 ( www.mathworks.com ) software was used for plotting the graphs.

    Techniques: Circular Dichroism, Software, Clear Native PAGE, Staining