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similarity plots and bootscan analysis methods in simplot version 3.5.1  (Simplot Science)

 
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    Simplot Science similarity plots and bootscan analysis methods in simplot version 3.5.1
    Similarity Plots And Bootscan Analysis Methods In Simplot Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    similarity plots and bootscan analysis methods in simplot version 3.5.1  (Simplot Science)
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    Simplot Science similarity plots and bootscan analysis methods in simplot version 3.5.1
    Similarity Plots And Bootscan Analysis Methods In Simplot Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    similarity plot and bootscan method version 3.5.1  (Johns Hopkins HealthCare)
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    similarity plot and bootscanning methods  (Simplot Science)
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    Putative mosaic structure of the RdRp gene of isolate 0723L-WDY. The partial gene sequence of RdRp (2194–3105 nt; HQ179724 ) of 0723L-WDY was analysed. (A) Similarity plot, (B) <t>Bootscanning</t> analysis (with GARD estimates of the breakpoint position shown in black) and (C) phylogenetic analysis of the regions on either side of the estimated breakpoint (position 432 nt). Bootstrapping analysis with 1000 pseudo-replicates was performed. Window and step sizes of 150 nt and 5 nt were used in the similarity plot and bootscanning analyses.
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    similarity plot and bootscan method  (Johns Hopkins HealthCare)
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    Johns Hopkins HealthCare similarity plot and bootscan method
    Putative mosaic structure of the RdRp gene of isolate 0723L-WDY. The partial gene sequence of RdRp (2194–3105 nt; HQ179724 ) of 0723L-WDY was analysed. (A) Similarity plot, (B) <t>Bootscanning</t> analysis (with GARD estimates of the breakpoint position shown in black) and (C) phylogenetic analysis of the regions on either side of the estimated breakpoint (position 432 nt). Bootstrapping analysis with 1000 pseudo-replicates was performed. Window and step sizes of 150 nt and 5 nt were used in the similarity plot and bootscanning analyses.
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    plotting similarity method in the bootscan program  (Simplot Science)
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    Simplot Science plotting similarity method in the bootscan program
    Putative mosaic structure of the RdRp gene of isolate 0723L-WDY. The partial gene sequence of RdRp (2194–3105 nt; HQ179724 ) of 0723L-WDY was analysed. (A) Similarity plot, (B) <t>Bootscanning</t> analysis (with GARD estimates of the breakpoint position shown in black) and (C) phylogenetic analysis of the regions on either side of the estimated breakpoint (position 432 nt). Bootstrapping analysis with 1000 pseudo-replicates was performed. Window and step sizes of 150 nt and 5 nt were used in the similarity plot and bootscanning analyses.
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    Putative mosaic structure of the RdRp gene of isolate 0723L-WDY. The partial gene sequence of RdRp (2194–3105 nt; HQ179724 ) of 0723L-WDY was analysed. (A) Similarity plot, (B) Bootscanning analysis (with GARD estimates of the breakpoint position shown in black) and (C) phylogenetic analysis of the regions on either side of the estimated breakpoint (position 432 nt). Bootstrapping analysis with 1000 pseudo-replicates was performed. Window and step sizes of 150 nt and 5 nt were used in the similarity plot and bootscanning analyses.

    Journal: Epidemics

    Article Title: Evolutionary and molecular analysis of the emergent severe fever with thrombocytopenia syndrome virus

    doi: 10.1016/j.epidem.2012.09.002

    Figure Lengend Snippet: Putative mosaic structure of the RdRp gene of isolate 0723L-WDY. The partial gene sequence of RdRp (2194–3105 nt; HQ179724 ) of 0723L-WDY was analysed. (A) Similarity plot, (B) Bootscanning analysis (with GARD estimates of the breakpoint position shown in black) and (C) phylogenetic analysis of the regions on either side of the estimated breakpoint (position 432 nt). Bootstrapping analysis with 1000 pseudo-replicates was performed. Window and step sizes of 150 nt and 5 nt were used in the similarity plot and bootscanning analyses.

    Article Snippet: Putative mosaic sequences were subsequently analysed using the similarity plot and bootscanning methods implemented in SIMPLOT v3.5 ( ).

    Techniques: Sequencing