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Protein interactions analysis and validation of hub genes. ( A – C ) General diagram of protein interactions analysis encoded by three groups of DEGs ( A ), Cluster 1 ( B ), and Cluster 2 ( C ) obtained according to the MCODE algorithm. ( D – H ) RT-qPCR was used to analyze the mRNA expression levels of hub genes Bgn ( D ), Ctsb ( E ), Lum ( F ), <t>Serpine1</t> ( G ), and Tnfaip6 ( H ). ( I – N ) Western blot ( I ) was used to verify the protein expression levels of hub genes Bgn ( J ), Ctsb ( K ), Lum ( L ), Serpine1 ( M ), and Tnfaip6 ( N ). Statistical significance was indicated as * p ≤ 0.05, ** p ≤ 0.01, *** p ≤ 0.001.
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Validation of key differentially expressed genes (DEGs) at mRNA and protein levels. A-B qRT-PCR validation of relative mRNA expression levels for selected genes (CEBPB, <t>SERPINE1,</t> S100A1, CKS1B, ADH1B, MYOM1, PTGFR, ACLY) in T-HESCs comparing AM vs. NC and CC vs. NC co-culture conditions. Expression normalized to GAPDH. C-D ELISA validation of protein concentrations for corresponding key molecules in cell culture supernatants, comparing AM vs. NC and CC vs. NC co-culture conditions. Data presented as mean ± SD or similar; significance indicated ( P < 0.05)
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Protein interactions analysis and validation of hub genes. ( A – C ) General diagram of protein interactions analysis encoded by three groups of DEGs ( A ), Cluster 1 ( B ), and Cluster 2 ( C ) obtained according to the MCODE algorithm. ( D – H ) RT-qPCR was used to analyze the mRNA expression levels of hub genes Bgn ( D ), Ctsb ( E ), Lum ( F ), Serpine1 ( G ), and Tnfaip6 ( H ). ( I – N ) Western blot ( I ) was used to verify the protein expression levels of hub genes Bgn ( J ), Ctsb ( K ), Lum ( L ), Serpine1 ( M ), and Tnfaip6 ( N ). Statistical significance was indicated as * p ≤ 0.05, ** p ≤ 0.01, *** p ≤ 0.001.

Journal: Journal of Pain Research

Article Title: Efficacy and Potential Mechanisms of Yi-Ping Lin Circum-Knee Acupuncture in the Treatment of Knee Osteoarthritis

doi: 10.2147/JPR.S547968

Figure Lengend Snippet: Protein interactions analysis and validation of hub genes. ( A – C ) General diagram of protein interactions analysis encoded by three groups of DEGs ( A ), Cluster 1 ( B ), and Cluster 2 ( C ) obtained according to the MCODE algorithm. ( D – H ) RT-qPCR was used to analyze the mRNA expression levels of hub genes Bgn ( D ), Ctsb ( E ), Lum ( F ), Serpine1 ( G ), and Tnfaip6 ( H ). ( I – N ) Western blot ( I ) was used to verify the protein expression levels of hub genes Bgn ( J ), Ctsb ( K ), Lum ( L ), Serpine1 ( M ), and Tnfaip6 ( N ). Statistical significance was indicated as * p ≤ 0.05, ** p ≤ 0.01, *** p ≤ 0.001.

Article Snippet: Antibodies: mouse anti-β-actin monoclonal antibody (1:4000, TA-09, Zhongsui Jinqiao, China), Bgn (1:2000, 16409-1-AP, proteintech, China), Serpine1 (1:2000, bs-1704R, Bioss, China), Ctsb (1:2000, bs-1500R, Bioss, China), Tnfaip6 (1:1000, 13321-1-AP, proteintech, China), Lum (1:1000, 10677-1-AP, proteintech, China), Goat Anti Mouse IgG -HRP (1:4000, M21001L, Abmart, Shanghai, China), Goat Anti Rabbit IgG-HRP (1:4000, M21002L, Abmart, Shanghai, China).

Techniques: Biomarker Discovery, Quantitative RT-PCR, Expressing, Western Blot

Validation of key differentially expressed genes (DEGs) at mRNA and protein levels. A-B qRT-PCR validation of relative mRNA expression levels for selected genes (CEBPB, SERPINE1, S100A1, CKS1B, ADH1B, MYOM1, PTGFR, ACLY) in T-HESCs comparing AM vs. NC and CC vs. NC co-culture conditions. Expression normalized to GAPDH. C-D ELISA validation of protein concentrations for corresponding key molecules in cell culture supernatants, comparing AM vs. NC and CC vs. NC co-culture conditions. Data presented as mean ± SD or similar; significance indicated ( P < 0.05)

Journal: BMC Microbiology

Article Title: Reproductive tract microbiota dysbiosis in ovarian endometrioma and adenomyosis: multi-site 16S rRNA profiling and functional impact of key bacterial species on human endometrial stromal cells

doi: 10.1186/s12866-025-04412-7

Figure Lengend Snippet: Validation of key differentially expressed genes (DEGs) at mRNA and protein levels. A-B qRT-PCR validation of relative mRNA expression levels for selected genes (CEBPB, SERPINE1, S100A1, CKS1B, ADH1B, MYOM1, PTGFR, ACLY) in T-HESCs comparing AM vs. NC and CC vs. NC co-culture conditions. Expression normalized to GAPDH. C-D ELISA validation of protein concentrations for corresponding key molecules in cell culture supernatants, comparing AM vs. NC and CC vs. NC co-culture conditions. Data presented as mean ± SD or similar; significance indicated ( P < 0.05)

Article Snippet: Kits used included those for: ADH1B (MyBioSource, Cat. No. MBS4503934); MYOM1 (Thermo Fisher Scientific, Cat. No. PIPA5100626; or Proteintech, Cat. No. 22084-1-AP); PTGFR (ABclonal, Cat. No. RK07240; or MyBioSource, Cat. No. MBS9714736); ACLY (RayBiotech, Cat. No. ELH-ACLY; Biomatik, Cat. No. EKF60626 ; BPS Bioscience, Cat. No. 79904; or ABclonal, Cat. No. RK12483); CEBPB (Antibodies-online, Cat. No. ABIN989871); SERPINE1 (Proteintech, Cat. No. KE00109; MyBioSource, Cat. No. MBS175945; R&D Systems, Cat. No. DSE100; ABclonal, Cat. No. RK00133; or Sino Biological, Cat. No. KIT10296 ); S100A1 (Thermo Fisher Scientific, Cat. No. EH402RB; RayBiotech, Cat. No. ELH-S100A1; or MyBioSource, Cat. No. MBS4503934); and CKS1B (MyBioSource, Cat. No. MBS7207214; or Biomatik, Cat. No. EKA50789 ).

Techniques: Biomarker Discovery, Quantitative RT-PCR, Expressing, Co-Culture Assay, Enzyme-linked Immunosorbent Assay, Cell Culture