sequenom genotyping data (Sequenom)
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Sequenom Genotyping Data, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
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Sequencing:Article Title: Estimation of allele frequency and association mapping using next-generation sequencing data Article Snippet: Both the estimates using the ML method and the genotype calling method without filtering are highly correlated with the estimates made from the Sequenom genotype data (i.e., a small standardized difference between the two estimates in Figure ). .. However, estimates based on genotype calling with filtering show poor correspondence to the frequencies estimated from the Article Title: Estimation of allele frequency and association mapping using next-generation sequencing data Article Snippet: However, estimates based on genotype calling with filtering show poor correspondence to the frequencies estimated from the Sequenom genotype data, especially when sequencing depth is low. .. Interestingly, there is one SNP where the estimated MAF from the resequencing data is very different from the estimate obtained from the other:Article Title: A prezygotic transmission distorter acting equally in female and male zebra finches Taeniopygia guttata. Article Snippet: The two parental alleles at a specific locus are usually inherited with equal probability to the offspring.. However, at least three processes can lead to an apparent departure from fair segregation: early viability selection, biased gene conversion and various kinds of segregation distortion.. Here, we conduct a genome-wide scan for transmission distortion in a captive population of zebra finches (Taeniopygia guttata) using 1302 single-nucleotide polymorphisms (SNPs) followed by confirmatory analyses on independent samples from the same population. Article Title: Monoallelic expression determines oncogenic progression and outcome in benign and malignant brain tumors. Article Snippet: The authors thank all of the patients and their families who were involved with the study, as well as the Canadian Virtual Brain Tumor Bank and its affiliate members for the adult tumor tissues and also thank staff at TCAG for assistance and advice with themicroarray processing, and staff at AGTC for assistance with processing and analysis of the Article Title: Association between in vivo alcohol metabolism and genetic variation in pathways that metabolize the carbon skeleton of ethanol and NADH reoxidation in the Alcohol Challenge Twin Study Article Snippet: Correction for sex, age, age 2 , sex*age andsex*age 2 was performed by fitting covariates in theregression model. Phenotypes were also adjusted for possible effects ofpopulation stratification in our sample by fitting the first ten eigenvectors(PC1-PC10) from European-only principal components analysis of ancestry in theregression model ( McEvoy et al., 2009 ). Control:Article Title: ABO blood group associations with markers of endothelial dysfunction in the Multi-Ethnic Study of Atherosclerosis Article Snippet: Additional genotyping of key functional ABO genetic variants necessary for ABO blood type prediction was conducted using a custom Sequenom (San Diego, CA) panel that included 10 ABO variants as part of a 27 variant panel design, three of which (rs8176746, rs1053878, rs7853989) were previously assayed by the Illumina arrays. .. Quality control for the |

