Protein Concentration:Article Title: Target-Stabilized Base Editors Enable Robust High-Fidelity RNA Editing
Article Snippet: .. Protein concentration was measured using the Pierce BCA Protein Assay Kit (23225, Thermo Scientific), after which the samples were mixed with 5×SDS-PAGE Protein Loading Buffer (G2075, Servicebio) and denatured by heating. .. Protein separation was performed via SDS-PAGE electrophoresis according to standard procedures, followed by transfer to 0.45-μm polyvinylidene fluoride (PVDF) membranes (Merck Millipore).
Bicinchoninic Acid Protein Assay:Article Title: Target-Stabilized Base Editors Enable Robust High-Fidelity RNA Editing
Article Snippet: .. Protein concentration was measured using the Pierce BCA Protein Assay Kit (23225, Thermo Scientific), after which the samples were mixed with 5×SDS-PAGE Protein Loading Buffer (G2075, Servicebio) and denatured by heating. .. Protein separation was performed via SDS-PAGE electrophoresis according to standard procedures, followed by transfer to 0.45-μm polyvinylidene fluoride (PVDF) membranes (Merck Millipore).
Nucleic Acid Electrophoresis:Article Title: IL-17-producing γδ T cells in the tumor microenvironment promote radioresistance in mice
Article Snippet: The lysates were centrifuged at 12,000×g for 30 minutes at 4°C, and the supernatant 588 was collected for protein quantification using the BCA protein assay kit (Servicebio, G2026). .. 589 Protein samples were denatured in SDS-polyacrylamide gel electrophoresis (SDS-PAGE) loading 590 buffer (Servicebio, G2075) by boiling at 100°C for 10 minutes. ..
Polyacrylamide Gel Electrophoresis:Article Title: Identification of novel protein biomarkers for knee osteoarthritis by integrating human plasma proteome: evidence from Mendelian randomization and preliminary in vitro investigation
Article Snippet: TA BCA protein assay kit (Cat. no. G2026, Servicebio, China) was used to measure protein concentration in the supernatant. .. The protein solution was mixed with a 5 × sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) protein loading buffer (Cat. no. G2013, Servicebio, China) at a ratio of 4:1 and then heated in a 95 °C water bath for 10 min to denature the proteins, which were then separated by SDS-PAGE using a fast gel preparation kit (Cat. no. G2003, Servicebio, China) and transferred onto polyvinylidene fluoride membranes. .. The membranes were blocked with 5% non-fat milk for 1 h and incubated overnight at 4 °C with primary antibodies: rabbit anti-NF-κB p65 (phospho S536) (1:2,000; Cat. no. ab239882, Abcam, UK), mouse anti-PRTN3 (1:1,000; Cat. no. sc-74534, Santa Cruz Biotechnology, USA), mouse anti-MPO (1:1,000; Cat. no. sc-390109, Santa Cruz Biotechnology, USA), and rabbit anti-GAPDH (1:2,000; Cat. no. GB11002, Servicebio, China).
Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
SDS Page:Article Title: Identification of novel protein biomarkers for knee osteoarthritis by integrating human plasma proteome: evidence from Mendelian randomization and preliminary in vitro investigation
Article Snippet: TA BCA protein assay kit (Cat. no. G2026, Servicebio, China) was used to measure protein concentration in the supernatant. .. The protein solution was mixed with a 5 × sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) protein loading buffer (Cat. no. G2013, Servicebio, China) at a ratio of 4:1 and then heated in a 95 °C water bath for 10 min to denature the proteins, which were then separated by SDS-PAGE using a fast gel preparation kit (Cat. no. G2003, Servicebio, China) and transferred onto polyvinylidene fluoride membranes. .. The membranes were blocked with 5% non-fat milk for 1 h and incubated overnight at 4 °C with primary antibodies: rabbit anti-NF-κB p65 (phospho S536) (1:2,000; Cat. no. ab239882, Abcam, UK), mouse anti-PRTN3 (1:1,000; Cat. no. sc-74534, Santa Cruz Biotechnology, USA), mouse anti-MPO (1:1,000; Cat. no. sc-390109, Santa Cruz Biotechnology, USA), and rabbit anti-GAPDH (1:2,000; Cat. no. GB11002, Servicebio, China).
Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
Recombinant:Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
Real-time Polymerase Chain Reaction:Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
Plasmid Preparation:Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
Purification:Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
Lysis:Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
CCK-8 Assay:Article Title: Regulatory role of phosphatidylcholine metabolic reprogramming in colorectal cancer progression and neutrophil interactions.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies ATP10A Rabbit pAb Thermo Fisher Cat# PA5-120400; RRID: AB_2913972 DBI Polyclonal antibody(Rabbit) proteintech Cat# 14490-1-AP; RRID: AB_2211037 Beta Actin Polyclonal antibody proteintech Cat# 20536-1-AP; RRID: AB_10700003 HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H+L) proteintech Cat# SA00001-2; RRID: AB_2722564 Biological samples Colorectal cancer and adjacent normal tissues The Eighth Affiliated Hospital of Southern Medical University (The First People’s Hospital of Shunde Foshan) N/A Chemicals, peptides, and recombinant proteins L15 medium BIOSPECIES Cat# Bios-0009 RPMI-1640 medium Servicebio Cat# G4531-500ML Foetal Bovine Serum TOCYTO Cat# UT81304 0.25% Trypsin-EDTA Solution Servicebio Cat# G4001-100ML Penicillin-Streptomycin Solution (100×) Servicebio Cat# G4003-100ML RNAlater TM Stabilization Solution Thermo Fisher Cat# AM7021-500ml RNAiso Plus Takara Cat# 9109 HiScript II Q RT SuperMix for qPCR Vazyme Cat# R222-01 ChamQ SYBR qPCR Master Mix Vazyme Cat# Q311-02 ESP3I (BSMBI) Thermo Fisher Cat# ER0451 T4 DNA Ligase Vazyme Cat# C301-01 T4 Polynucleotide Kinase Servicebio Cat# G3458-500U Trelief TM 5α Chemically Competent Cell Tsingke Biotech Cat# TSC-C01 EndoFree Mini Plasmid Kit II TIANGEN BIOTECH (BEIJING) Cat# DP118 TIANgel Midi Purification Kit TIANGEN BIOTECH (BEIJING) Cat# DP209 RIPA Lysis Buffer Beyotime Cat# P0013B 5× SDS-PAGE Protein Loading Buffer (Odorless, Reducing) Servicebio Cat# G2075-10ML One-Step PAGE Gel Fast Preparation Kit (8%) Vazyme Cat# E302-01 One-Step PAGE Gel Fast Preparation Kit (12%) Vazyme Cat# E304-01 PVDF,0.2 μm Merck millipore Cat# ISEQ00010 Omni-ECL TM Femto Light Chemiluminescence Kit Shanghai Yazyme Cat# SQ201 Triton X-100 Beyotime Cat# P0096-100ml 4% Paraformaldehyde (General Purpose Tissue Fixative) Biosharp Cat# BL539A Critical commercial assays BeyoClick TM EdU Cell Proliferation Kit with Alexa Fluor 488 Beyotime Cat# C0071S Cell Counting Kit-8 Beyotime Cat# C0038 (Continued on next page) e1 iScience 28, 114150, December 19, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Raw targeted lipidomics data This paper https://dev.metabolomicsworkbench.org:22222/ data/DRCCMetadata.php?Mode=Study&StudyID= ST003864&Access=QerE9948 (Metabolomics Workbench Project ID: PR002420) UCSC Xena: TCGA TARGET GTEX UCSC Xena 42 https://xenabrowser.net/ GWAS: GCST012879 Huyghe et al. 43 https://www.ebi.ac.uk/gwas/home FinnGen: R10_C3_COLORECTAL_EXALLC FinnGen database 44 https://r10.risteys.finngen.fi/endpoints/ C3_COLORECTAL_EXALLC GWAS: GCST90277238-GCST90277416 Ottensmann et al. 45 https://www.ebi.ac.uk/gwas/home GEO: GSE10950 Jiang et al. 46 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE10950 GEO: GSE21510 Tsukamoto et al. 47 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE21510 GEO: GSE22598 Okazaki et al. 48 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE22598 GEO: GSE24514 Alhopuro et al. 49 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE24514 GEO: GSE25071 A ̊ gesen et al. 50 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE25071 GEO: GSE32323 Khamas et al. 51 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE32323 GEO: GSE35279 Kagawa et al. 52 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE35279 GEO: GSE37364 Valcz G Molná r et al. 53 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE37364 GEO: GSE41328 Lin et al. 54 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE41328 GEO: GSE44076 Dı́ez-Villanueva et al. 55 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE44076 GEO: GSE50746 Yamagishi et al. 56 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE50746 GEO: GSE110223 Vlachavas et al. 57 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE87211 Hu et al. 58 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE110223 GEO: GSE39582 Marisa et al. 59 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE39582 GEO: GSE17536 Smith et al. 60 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17536 GEO: GSE17537 Smith et al. 61 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE17537 GEO: GSE132465 Lee et al. 62 https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE132465 Experimental models: Cell lines SW620 Servicebio Cat# STCC10812P DLD-1 Shanghai Jinyuan Biotechnology Cat# JY056 Oligonucleotides See Tables S4 and S5 N/A Software and algorithms R v4.2.3 v4.4.1 R Core Team (2024) https://www.R-project.org/ (Continued on next page) iScience 28, 114150, December 19, 2025 e2
Concentration Assay:
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