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Medicago single cell rnaseq data
Single Cell Rnaseq Data, supplied by Medicago, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rnaseq+data/cell+program+single+transcriptome/pm42244149-447-0-4
Average 86 stars, based on 1 article reviews
single cell rnaseq data - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

RNA sequencing:

Article Title: MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.
Article Snippet: .. Results Retrieval, quality checking and organization of RNAseq data To build MtExpress, RNAseq data (i.e. sequenced reads and fastq) generated from Medicago were downloaded from the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) (Fig. 1), along with associated metadata. ..

Article Title: Medicago truncatula SOC1 Genes Are Up-regulated by Environmental Cues That Promote Flowering
Article Snippet: .. To determine whether the Group A and B SOC1 genes also have distinct patterns of expression in other plants, we first examined available RNAseq data from Medicago sativa (The Alfalfa Gene Index and Expression Atlas Database ). ..

Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

Article Title: Small peptide signaling pathways modulating macronutrient utilization in plants.
Article Snippet: Root system architecture (RSA) and physiological functions define macronutrient uptake efficiency.. Small signaling peptides (SSPs), that act in manners similar to hormones, and their cognate receptors transmit signals both locally and systemically.. Several SSPs controlling morphological and physiological traits of roots have been identified to be associated with macronutrient uptake.

Generated:

Article Title: MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.
Article Snippet: .. Results Retrieval, quality checking and organization of RNAseq data To build MtExpress, RNAseq data (i.e. sequenced reads and fastq) generated from Medicago were downloaded from the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) (Fig. 1), along with associated metadata. ..

Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

Sequencing:

Article Title: MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.
Article Snippet: .. Results Retrieval, quality checking and organization of RNAseq data To build MtExpress, RNAseq data (i.e. sequenced reads and fastq) generated from Medicago were downloaded from the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) (Fig. 1), along with associated metadata. ..

Expressing:

Article Title: Medicago truncatula SOC1 Genes Are Up-regulated by Environmental Cues That Promote Flowering
Article Snippet: .. To determine whether the Group A and B SOC1 genes also have distinct patterns of expression in other plants, we first examined available RNAseq data from Medicago sativa (The Alfalfa Gene Index and Expression Atlas Database ). ..

Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

In Silico:

Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

other:

Article Title: Medicago truncatula resources to study legume biology and symbiotic nitrogen fixation
Article Snippet: The array data from Mt- EA and RNAseq data are also housed at ( https://medicago. oulouse.inrae.fr/MtExpress ).



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Visual summary of MR findings for PSMC3 . A, GReX of PSMC3 is associated with the volume of the ventral diencephalon according to three different gene expression models trained in the caudate, putamen, and cerebellum. PSMC3 encodes the protein Rpt5, which acts as an ATPase involved in substrate translocation in the 26S proteasome complex. PSMC3 expression levels from <t>bulk</t> <t>RNAseq</t> associated with (B) global cognition score at last visit, (C) longitudinal global cognition trajectory, and (D) amyloid beta deposition. The x axis in the volcano plot represents the adjusted R 2 value derived from the regression analyses. PSMC3 expression levels from snRNAseq associated with AD case/control status in (E) CUX2− and (F) CUX2+ excitatory neurons. The x axis represents the log‐fold change of PSMC3 expression between AD cases and normal controls. The y axis in (B–F) represents the −log 10 P values. The blue dots represent significant P values ( P FDR < 0.05), the green dots represent nominally significant P values, and the gray dots represent non‐significant P values. The red dots and arrows highlight PSMC3 . AD, Alzheimer's disease; CN, caudate nucleus; DLPFC, dorsolateral prefrontal cortex; FDR, false discovery rate; GreX, genetically regulated gene expression; JTI, joint tissue imputation; MR, Mendelian randomization; PCC, posterior cingulate cortex; RNAseq, RNA sequencing; snRNAseq, single‐nucleus RNA sequencing.
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Image Search Results


Visual summary of MR findings for PSMC3 . A, GReX of PSMC3 is associated with the volume of the ventral diencephalon according to three different gene expression models trained in the caudate, putamen, and cerebellum. PSMC3 encodes the protein Rpt5, which acts as an ATPase involved in substrate translocation in the 26S proteasome complex. PSMC3 expression levels from bulk RNAseq associated with (B) global cognition score at last visit, (C) longitudinal global cognition trajectory, and (D) amyloid beta deposition. The x axis in the volcano plot represents the adjusted R 2 value derived from the regression analyses. PSMC3 expression levels from snRNAseq associated with AD case/control status in (E) CUX2− and (F) CUX2+ excitatory neurons. The x axis represents the log‐fold change of PSMC3 expression between AD cases and normal controls. The y axis in (B–F) represents the −log 10 P values. The blue dots represent significant P values ( P FDR < 0.05), the green dots represent nominally significant P values, and the gray dots represent non‐significant P values. The red dots and arrows highlight PSMC3 . AD, Alzheimer's disease; CN, caudate nucleus; DLPFC, dorsolateral prefrontal cortex; FDR, false discovery rate; GreX, genetically regulated gene expression; JTI, joint tissue imputation; MR, Mendelian randomization; PCC, posterior cingulate cortex; RNAseq, RNA sequencing; snRNAseq, single‐nucleus RNA sequencing.

Journal: Alzheimer's & Dementia

Article Title: Neuroimaging PheWAS and molecular phenotyping implicate PSMC3 in Alzheimer's disease

doi: 10.1002/alz.71217

Figure Lengend Snippet: Visual summary of MR findings for PSMC3 . A, GReX of PSMC3 is associated with the volume of the ventral diencephalon according to three different gene expression models trained in the caudate, putamen, and cerebellum. PSMC3 encodes the protein Rpt5, which acts as an ATPase involved in substrate translocation in the 26S proteasome complex. PSMC3 expression levels from bulk RNAseq associated with (B) global cognition score at last visit, (C) longitudinal global cognition trajectory, and (D) amyloid beta deposition. The x axis in the volcano plot represents the adjusted R 2 value derived from the regression analyses. PSMC3 expression levels from snRNAseq associated with AD case/control status in (E) CUX2− and (F) CUX2+ excitatory neurons. The x axis represents the log‐fold change of PSMC3 expression between AD cases and normal controls. The y axis in (B–F) represents the −log 10 P values. The blue dots represent significant P values ( P FDR < 0.05), the green dots represent nominally significant P values, and the gray dots represent non‐significant P values. The red dots and arrows highlight PSMC3 . AD, Alzheimer's disease; CN, caudate nucleus; DLPFC, dorsolateral prefrontal cortex; FDR, false discovery rate; GreX, genetically regulated gene expression; JTI, joint tissue imputation; MR, Mendelian randomization; PCC, posterior cingulate cortex; RNAseq, RNA sequencing; snRNAseq, single‐nucleus RNA sequencing.

Article Snippet: The Human Protein Atlas (HPA) provides bulk RNAseq data across 253 different tissues, encompassing 19,023 genes.

Techniques: Gene Expression, Translocation Assay, Expressing, RNA sequencing, Derivative Assay, Control, RNA Sequencing