genomics suite rna-seq analysis pipeline (Partek)
90
Structured Review
Partek
genomics suite rna-seq analysis pipeline
Genomics Suite Rna Seq Analysis Pipeline, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+analysis+pipeline/rna+seq+analysis+pipeline/pmc11290974-214-22-21
Average 90 stars, based on 1 article reviews
Genomics Suite Rna Seq Analysis Pipeline, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+analysis+pipeline/rna+seq+analysis+pipeline/pmc11290974-214-22-21
Average 90 stars, based on 1 article reviews
genomics suite rna-seq analysis pipeline - by Bioz Stars,
2026-10
90/100 stars
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1) Product Images from "The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect"
Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect
Journal: The Journal of Clinical Investigation
doi: 10.1172/JCI170369
Figure Legend Snippet: ( A – B ) Lineage tracing of chondrocytes coexpressing mutant Ifitm5 and Ai9 reporter in Rosa 26 mIfitm5/Ai9 Acan-Cre ERT2 mice. Tamoxifen injection was performed at P10, and bones were collected after 3 weeks (at 5 weeks of age). Representative images of the proximal tibia ( A ) and the tibia diaphyseal area ( B ) Decreased fraction of Ai9 + cells migrated to the bone diaphysis in mutant animals compared with littermate controls ( n = 3 per genotype; n = 2–3 fields counted per sample; * P = 0.03, by 2-tailed Student’s t test). Original magnification, ×20. ( C ) RNA-Seq of total femoral cDNA from Rosa26 mIfitm5/+ Acan-Cre ERT2 mice ( n = 3 per genotype) showed enrichment for chondrogenic gene expression in the mutant samples by GO term analysis. ( D ) Heatmap of focused differential gene expression analysis from RNA-Seq, showing upregulation of chondrogenic gene markers and decreased expression of osteogenic markers in the mutants compared with the control group.
Techniques Used: Mutagenesis, Injection, RNA Sequencing Assay, Expressing, Control
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Expressing:Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: Targeting TGF- β for treatment of osteogenesis imperfecta Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using Mutagenesis:Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: Targeting TGF- β for treatment of osteogenesis imperfecta Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using Injection:Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: Targeting TGF- β for treatment of osteogenesis imperfecta Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using RNA Sequencing Assay:Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: Targeting TGF- β for treatment of osteogenesis imperfecta Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using Control:Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: The IFITM5 mutation in osteogenesis imperfecta type V is associated with an ERK/SOX9-dependent osteoprogenitor differentiation defect Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using the Article Title: Targeting TGF- β for treatment of osteogenesis imperfecta Article Snippet: Normalization, differential expression, hierarchical clustering, and GO analysis were then performed using |
