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protein database  (Biotechnology Information)

 
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    Structured Review

    Biotechnology Information protein database
    Protein Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protein+database/biotechnology+database+information+ncbi/pm42278211-226-11-23
    Average 86 stars, based on 1 article reviews
    protein database - by Bioz Stars, 2026-10
    86/100 stars

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    other:

    Article Title: Genomic resilience to sequential environmental perturbations in two sympatric costal fish species.
    Article Snippet: Natural disasters impose acute environmental stressors that can drastically reshape marine populations.. Abrupt changes in habitat, resulting from hypoxia due to upwelling and seismic-induced tsunamis, are known chronic events, but their effects on marine taxa are poorly studied.. This study investigates the genomic and mitochondrial responses of two coastal fish species, Aphos porosus and Normanichthys crockeri, to two sequential disturbances: a hypoxic upwelling event in 2008 and a seismic-induced tsunami in 2010 in Coliumo Bay, Chile.

    Sequencing:

    Article Title: Vicinal disulfide bond modulates A1-GPIbα interaction by altering the force-induced conformational changes of A2 domain
    Article Snippet: .. The sequence information of the A1 domain, A2 fragments, A1A2 fragments, and GPIbα LBD were retrieved from the protein database of the National Center for Biotechnology Information (NCBI) and were properly trimmed to match the actual sequences used in protein expression. ..

    Article Title: Vicinal disulfide bond modulates A1-GPIbα interaction by altering the force-induced conformational changes of A2 domain.
    Article Snippet: .. The sequence information of the A1 domain, A2 fragments, A1A2 fragments, and GPIbα LBD were retrieved from the protein database of the National Center for Biotechnology Information (NCBI) and were properly trimmed to match the actual sequences used in protein expression. ..

    Expressing:

    Article Title: Vicinal disulfide bond modulates A1-GPIbα interaction by altering the force-induced conformational changes of A2 domain
    Article Snippet: .. The sequence information of the A1 domain, A2 fragments, A1A2 fragments, and GPIbα LBD were retrieved from the protein database of the National Center for Biotechnology Information (NCBI) and were properly trimmed to match the actual sequences used in protein expression. ..

    Article Title: Vicinal disulfide bond modulates A1-GPIbα interaction by altering the force-induced conformational changes of A2 domain.
    Article Snippet: .. The sequence information of the A1 domain, A2 fragments, A1A2 fragments, and GPIbα LBD were retrieved from the protein database of the National Center for Biotechnology Information (NCBI) and were properly trimmed to match the actual sequences used in protein expression. ..



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    Image Search Results


    Graphical illustration of study design TCIA, The Cancer Imaging Archive; TCIA-LGG, The Cancer Genome Atlas Low Grade Glioma; UCSF-PDGM, The University of California San Francisco Preoperative Diffuse Glioma MRI; TCGA-GBM, The Cancer Genome Atlas Glioblastoma Multiforme Collection; CPTAC-GBM, The Clinical Proteomic Tumor Analysis Consortium Glioblastoma Multiforme Collection; IvyGAP, Ivy Glioblastoma Atlas Project; ROI, region of interest; THPA, The Human Protein Atlas.

    Journal: Cell Reports Medicine

    Article Title: Predicting glioma survival and extracellular matrix remodeling through MRI radiogenomics

    doi: 10.1016/j.xcrm.2026.102775

    Figure Lengend Snippet: Graphical illustration of study design TCIA, The Cancer Imaging Archive; TCIA-LGG, The Cancer Genome Atlas Low Grade Glioma; UCSF-PDGM, The University of California San Francisco Preoperative Diffuse Glioma MRI; TCGA-GBM, The Cancer Genome Atlas Glioblastoma Multiforme Collection; CPTAC-GBM, The Clinical Proteomic Tumor Analysis Consortium Glioblastoma Multiforme Collection; IvyGAP, Ivy Glioblastoma Atlas Project; ROI, region of interest; THPA, The Human Protein Atlas.

    Article Snippet: Database: The Human Protein Atlas version 24.0 , Global Core Biodata Resource , https://www.proteinatlas.org/.

    Techniques: Imaging

    The protein expression patterns of radiogenomics-based hub genes (A) The protein expression patterns of 7 hub genes between normal brain tissues and glioma were determined by immunohistochemistry (IHC) staining from The Human Protein Atlas (THPA) database. Compared with normal brain tissues, the protein expression levels of hub genes increased in glioma as the grading of the tumor increased, except for CXCL8 and IL-6 without obvious detection. (B) IHC staining of acquired glioma specimens in proliferative core exhibited higher protein expression levels of MMP2, MMP9, TIMP1, COL1A2, and CCL2 in the high-Rad-score group. Compared with the hub gene labeling index (LI) in the low-Rad-score group, LIs of MMP2, TIMP1, and COL1A2 were significantly higher in the high-Rad-score group (∗ p < 0.05; ∗∗ p < 0.01; ∗∗∗ p < 0.001). (C) The expression levels and localization of MMP2, TIMP1, and COL1A2 were shown by the multiplex immunohistochemistry (mIHC) staining. The biological markers represented by different colors are labeled in the figure. The expression of the three genes increased in the high-Rad-score group, and MMP2 exhibited the most significant difference.

    Journal: Cell Reports Medicine

    Article Title: Predicting glioma survival and extracellular matrix remodeling through MRI radiogenomics

    doi: 10.1016/j.xcrm.2026.102775

    Figure Lengend Snippet: The protein expression patterns of radiogenomics-based hub genes (A) The protein expression patterns of 7 hub genes between normal brain tissues and glioma were determined by immunohistochemistry (IHC) staining from The Human Protein Atlas (THPA) database. Compared with normal brain tissues, the protein expression levels of hub genes increased in glioma as the grading of the tumor increased, except for CXCL8 and IL-6 without obvious detection. (B) IHC staining of acquired glioma specimens in proliferative core exhibited higher protein expression levels of MMP2, MMP9, TIMP1, COL1A2, and CCL2 in the high-Rad-score group. Compared with the hub gene labeling index (LI) in the low-Rad-score group, LIs of MMP2, TIMP1, and COL1A2 were significantly higher in the high-Rad-score group (∗ p < 0.05; ∗∗ p < 0.01; ∗∗∗ p < 0.001). (C) The expression levels and localization of MMP2, TIMP1, and COL1A2 were shown by the multiplex immunohistochemistry (mIHC) staining. The biological markers represented by different colors are labeled in the figure. The expression of the three genes increased in the high-Rad-score group, and MMP2 exhibited the most significant difference.

    Article Snippet: Database: The Human Protein Atlas version 24.0 , Global Core Biodata Resource , https://www.proteinatlas.org/.

    Techniques: Expressing, Immunohistochemistry, Labeling, Multiplex Assay, Staining