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Addgene inc pgel1020
Pgel1020, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pentr+pter/pENTR%2FpTER+shATM+%232+(730-2)+(Plasmid+%2322527)/pmc12043052-11-9-10
Average 93 stars, based on 1 article reviews
pgel1020 - by Bioz Stars, 2026-10
93/100 stars

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Related Articles

shRNA:

Article Title: Sterol-regulated transmembrane protein TMEM86a couples LXR signaling to regulation of lysoplasmalogens in macrophages.
Article Snippet: .. Briefly, to silence Tmem86a, four independent shRNA sequences were designed using DSIR (32), cloned into pENTR/pTER+ (430-1) (Addgene #17453), and recombined into pLentiX1-PGK-GFP-DEST (694- 6, modified from Addgene #17297). ..

Article Title: The MARCH6-SQLE Axis Controls Endothelial Cholesterol Homeostasis and Angiogenic Sprouting.
Article Snippet: .. Generation of lentiviral particles and transduction of cell lines To silence expression ofMARCHF6 two independent shRNA sequences targetingMARCHF6were cloned into pENTR/pTER+ (430- 1) (addgene #17453). .. The resulting pENTR/pTER+shMARCHF6 constructs and the control plasmid pENTR/pTER+shLuc (w177-1) Cell Reports 32, 107944, August 4, 2020 e2 (addgene #17472) were recombined into the pLentiX1-PGK-GFP-DEST (694-6, modified from addgene #17297).

Article Title: Sterol-regulated transmembrane protein TMEM86a couples LXR signaling to regulation of lysoplasmalogens in macrophages
Article Snippet: .. Briefly, to silence Tmem86a, four independent shRNA sequences were designed using DSIR , cloned into pENTR/pTER+ (430-1) (Addgene #17453), and recombined into pLentiX1-PGK-GFP-DEST (694-6, modified from Addgene #17297). ..

Modification:

Article Title: Sterol-regulated transmembrane protein TMEM86a couples LXR signaling to regulation of lysoplasmalogens in macrophages.
Article Snippet: .. Briefly, to silence Tmem86a, four independent shRNA sequences were designed using DSIR (32), cloned into pENTR/pTER+ (430-1) (Addgene #17453), and recombined into pLentiX1-PGK-GFP-DEST (694- 6, modified from Addgene #17297). ..

Article Title: Sterol-regulated transmembrane protein TMEM86a couples LXR signaling to regulation of lysoplasmalogens in macrophages
Article Snippet: .. Briefly, to silence Tmem86a, four independent shRNA sequences were designed using DSIR , cloned into pENTR/pTER+ (430-1) (Addgene #17453), and recombined into pLentiX1-PGK-GFP-DEST (694-6, modified from Addgene #17297). ..

Plasmid Preparation:

Article Title: Epstein-Barr Virus LMP1 Promotes Syntenin-1- and Hrs-Induced Extracellular Vesicle Formation for Its Own Secretion To Increase Cell Proliferation and Migration
Article Snippet: The following oligonucleotides were used to construct the shRNA vectors directed against Alix, Hrs, TSG101, and Syntentin-1, where the Hrs, TSG101, Syntenin-1, and Alix target sequences were obtained from the Broad Institute GPP Web portal following searches with the corresponding gene names, and the scramble sequence was obtained by inputting the Syntenin-1 sequence into an online shRNA scramble tool through InvivoGen: GATCCCGCATAATCAAGGCACTGTAAAGTGTGCTGTCCTTTACAGTGCCTTGATTATGCTTTTTGGAAA and AGCTTTTCCAAAAAGCATAATCAAGGCACTGTAAAGGACAGCACACTTTACAGTGCCTTGATTATGCGG for Alix, GATCCCTATAGCATACTTGCATCTTTAGTGTGCTGTCCTAAAGATGCAAGTATGCTATATTTTTGGAAA and AGCTTTTCCAAAAATATAGCATACTTGCATCTTTAGGACAGCACACAAAGATGCAAGTATGCTATAGG for Syntenin-1, GATCCCGAGCTTCGCGATCCAAGATAAGTGTGCTGTCCTTATCTTGGATCGCGAAGCTCTTTTTGGAAA and AGCTTTTCCAAAAAGAGCTTCGCGATCCAAGATAAGGACAGCACACTTATCTTGGATCGCGAAGCTCGG for scramble, GATCCCGTACGTCTTCTGTCCCGTAAAGTGTGCTGTCCTTTACGGGACAGAAGACGTACTTTTTGGAAA and AGCTTTTCCAAAAAGTACGTCTTCTGTCCCGTAAAGGACAGCACACTTTACGGGACAGAAGACGTACGG for TSG101, and GATCCCCTCACGTCCGGAGTAACACTAGTGTGCTGTCCTAGTGTTACTCCGGACGTGAGTTTTTGGAAA and AGCTTTTCCAAAAACTCACGTCCGGAGTAACACTAGGACAGCACACTAGTGTTACTCCGGACGTGAGGG for Hrs. .. These oligonucleotides were annealed and ligated using T4 ligase between the BglII/HindIII sites of pENTR/pTER + (Addgene plasmid 17453, a gift from Eric Campeau and Paul Kaufman). .. The entry clones were verified by sequencing and then recombined with the destination vector pLenti X1 Zeo Dest (Addgene plasmid 17299, a gift from Eric Campeau and Paul Kaufman) using LR recombination (catalog number 11791-020; Invitrogen) according to the manufacturer’s instructions.

Article Title: Alix and Syntenin-1 direct amyloid precursor protein trafficking into extracellular vesicles
Article Snippet: The control scramble sequence was generated using the Invivogen shRNA scramble tool as previously described (62). .. The oligonucleotides listed below were annealed and ligated using T4 ligase between the Bgl II/Hind III sites of pENTR/pTER+ (Addgene plasmid # 17453, a gift from Eric Campeau & Paul Kaufman). .. Entry clones were then sequenced for veri cation, and recombined with the destination vector pLenti X1 Zeo Dest (Addgene plasmid # 17299, a gift from Eric Campeau & Paul Kaufman) using LR recombination (Invitrogen #11791-020) according to the manufacturer’s instructions, and as previously described (62).

Article Title: Alix and Syntenin-1 direct amyloid precursor protein trafficking into extracellular vesicles
Article Snippet: The control scramble sequence was generated using the Invivogen shRNA scramble tool as previously described [ ]. .. The oligonucleotides listed below were annealed and ligated using T4 ligase between the Bgl II/Hind III sites of pENTR/pTER+ (Addgene plasmid # 17453, a gift from Eric Campeau & Paul Kaufman). .. Entry clones were then sequenced for verification, and recombined with the destination vector pLenti X1 Zeo Dest (Addgene plasmid # 17299, a gift from Eric Campeau & Paul Kaufman) using LR recombination (Invitrogen #11791–020) according to the manufacturer’s instructions, and as previously described [ ].

Transduction:

Article Title: The MARCH6-SQLE Axis Controls Endothelial Cholesterol Homeostasis and Angiogenic Sprouting.
Article Snippet: .. Generation of lentiviral particles and transduction of cell lines To silence expression ofMARCHF6 two independent shRNA sequences targetingMARCHF6were cloned into pENTR/pTER+ (430- 1) (addgene #17453). .. The resulting pENTR/pTER+shMARCHF6 constructs and the control plasmid pENTR/pTER+shLuc (w177-1) Cell Reports 32, 107944, August 4, 2020 e2 (addgene #17472) were recombined into the pLentiX1-PGK-GFP-DEST (694-6, modified from addgene #17297).

Expressing:

Article Title: The MARCH6-SQLE Axis Controls Endothelial Cholesterol Homeostasis and Angiogenic Sprouting.
Article Snippet: .. Generation of lentiviral particles and transduction of cell lines To silence expression ofMARCHF6 two independent shRNA sequences targetingMARCHF6were cloned into pENTR/pTER+ (430- 1) (addgene #17453). .. The resulting pENTR/pTER+shMARCHF6 constructs and the control plasmid pENTR/pTER+shLuc (w177-1) Cell Reports 32, 107944, August 4, 2020 e2 (addgene #17472) were recombined into the pLentiX1-PGK-GFP-DEST (694-6, modified from addgene #17297).

Clone Assay:

Article Title: The MARCH6-SQLE Axis Controls Endothelial Cholesterol Homeostasis and Angiogenic Sprouting.
Article Snippet: .. Generation of lentiviral particles and transduction of cell lines To silence expression ofMARCHF6 two independent shRNA sequences targetingMARCHF6were cloned into pENTR/pTER+ (430- 1) (addgene #17453). .. The resulting pENTR/pTER+shMARCHF6 constructs and the control plasmid pENTR/pTER+shLuc (w177-1) Cell Reports 32, 107944, August 4, 2020 e2 (addgene #17472) were recombined into the pLentiX1-PGK-GFP-DEST (694-6, modified from addgene #17297).

Article Title: Sterol-regulated transmembrane protein TMEM86a couples LXR signaling to regulation of lysoplasmalogens in macrophages
Article Snippet: .. Briefly, to silence Tmem86a, four independent shRNA sequences were designed using DSIR , cloned into pENTR/pTER+ (430-1) (Addgene #17453), and recombined into pLentiX1-PGK-GFP-DEST (694-6, modified from Addgene #17297). ..

other:

Article Title: Extracellular Vesicles in Disease Pathogenesis and as a Therapeutic Agent
Article Snippet: and were cultured in neurobasal A medium (Gibco; A3653401) supplemented with B-27 (Gibco; A3582801), 0.5 mM L-glutamine, and penicillin-streptomycin at 37°C and 5% COz.

Article Title: Epstein-Barr Virus LMP1 Promotes Syntenin-1- and Hrs-Induced Extracellular Vesicle Formation for Its Own Secretion To Increase Cell Proliferation and Migration
Article Snippet: Lentiviral shRNA constructs (Mission shRNA) for ARF6 (catalog number, TRCN0000380270), SRC (TRCN0000038150), CHMP1A (TRCN0000250119), CHMP2A (TRCN0000122479), CHMP2B (TRCN0000129922), CHMP3 (TRCN0000149440), CHMP4B (TRCN0000180330), CHMP5 (TRCN0000163206), and CHMP6 (TRCN0000151037) were purchased from Sigma-Aldrich.



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(A ) Growth curves of Gardnerella isolates at 37 ˚C in 7% CO 2 for 30 h. Each point represents an average of three replicates, and error bars indicate standard deviation. ( B ) Restriction activity assay results. “L” Size markers; Lane 1, undigested <t>pKO403-</t> lacZ′- sp; Lane 2, pKO403- lacZ′- sp treated with the supernatant from G. vaginalis ATCC 14018; Lane 3, pKO403- lacZ′- Sp treated with the supernatant from G. vaginalis ATCC 49145.
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(A ) Growth curves of Gardnerella isolates at 37 ˚C in 7% CO 2 for 30 h. Each point represents an average of three replicates, and error bars indicate standard deviation. ( B ) Restriction activity assay results. “L” Size markers; Lane 1, undigested <t>pKO403-</t> lacZ′- sp; Lane 2, pKO403- lacZ′- sp treated with the supernatant from G. vaginalis ATCC 14018; Lane 3, pKO403- lacZ′- Sp treated with the supernatant from G. vaginalis ATCC 49145.
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(A ) Growth curves of Gardnerella isolates at 37 ˚C in 7% CO 2 for 30 h. Each point represents an average of three replicates, and error bars indicate standard deviation. ( B ) Restriction activity assay results. “L” Size markers; Lane 1, undigested <t>pKO403-</t> lacZ′- sp; Lane 2, pKO403- lacZ′- sp treated with the supernatant from G. vaginalis ATCC 14018; Lane 3, pKO403- lacZ′- Sp treated with the supernatant from G. vaginalis ATCC 49145.
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Image Search Results


(A ) Growth curves of Gardnerella isolates at 37 ˚C in 7% CO 2 for 30 h. Each point represents an average of three replicates, and error bars indicate standard deviation. ( B ) Restriction activity assay results. “L” Size markers; Lane 1, undigested pKO403- lacZ′- sp; Lane 2, pKO403- lacZ′- sp treated with the supernatant from G. vaginalis ATCC 14018; Lane 3, pKO403- lacZ′- Sp treated with the supernatant from G. vaginalis ATCC 49145.

Journal: Microbiology Spectrum

Article Title: Transformation of Gardnerella vaginalis with a Bifidobacterium-Escherichia coli shuttle vector plasmid

doi: 10.1128/spectrum.00481-25

Figure Lengend Snippet: (A ) Growth curves of Gardnerella isolates at 37 ˚C in 7% CO 2 for 30 h. Each point represents an average of three replicates, and error bars indicate standard deviation. ( B ) Restriction activity assay results. “L” Size markers; Lane 1, undigested pKO403- lacZ′- sp; Lane 2, pKO403- lacZ′- sp treated with the supernatant from G. vaginalis ATCC 14018; Lane 3, pKO403- lacZ′- Sp treated with the supernatant from G. vaginalis ATCC 49145.

Article Snippet: Plasmid pKO403- lacZ′- Sp was purchased from Addgene (Cat# 174726) ( ).

Techniques: Standard Deviation, Activity Assay

Spectinomycin tolerance of G. vaginalis ATCC 49145 and G. vaginalis ATCC 49145 with the  pKO403- lacZ′- Sp plasmid  in agar and broth <xref ref-type= b " width="100%" height="100%">

Journal: Microbiology Spectrum

Article Title: Transformation of Gardnerella vaginalis with a Bifidobacterium-Escherichia coli shuttle vector plasmid

doi: 10.1128/spectrum.00481-25

Figure Lengend Snippet: Spectinomycin tolerance of G. vaginalis ATCC 49145 and G. vaginalis ATCC 49145 with the pKO403- lacZ′- Sp plasmid in agar and broth b

Article Snippet: Plasmid pKO403- lacZ′- Sp was purchased from Addgene (Cat# 174726) ( ).

Techniques: Plasmid Preparation, Modification

(A) G. vaginalis grown in the presence of X-gal on MHA supplemented with horse serum. ( B ) G. vaginalis + pKO403- lacZ′- Sp in the presence of X-gal on MHA supplemented with horse serum and 50 µg/mL of spectinomycin. The inset in the top right corner of each panel shows an enlarged single colony. Image taken from Canon R6 with Laowa 100 mm f/2.8 2 × Ultra Macro Apo lens.

Journal: Microbiology Spectrum

Article Title: Transformation of Gardnerella vaginalis with a Bifidobacterium-Escherichia coli shuttle vector plasmid

doi: 10.1128/spectrum.00481-25

Figure Lengend Snippet: (A) G. vaginalis grown in the presence of X-gal on MHA supplemented with horse serum. ( B ) G. vaginalis + pKO403- lacZ′- Sp in the presence of X-gal on MHA supplemented with horse serum and 50 µg/mL of spectinomycin. The inset in the top right corner of each panel shows an enlarged single colony. Image taken from Canon R6 with Laowa 100 mm f/2.8 2 × Ultra Macro Apo lens.

Article Snippet: Plasmid pKO403- lacZ′- Sp was purchased from Addgene (Cat# 174726) ( ).

Techniques:

Plasmid stability. G. vaginalis with pKO403- lacZ′- Sp was grown in the presence or absence of spectinomycin (as indicated in the legend) for 18 h or 24 h and then plated in CBA with and without spectinomycin. Colony-forming units on selective and non-selective media were counted to calculate the proportion of Sp R bacteria. Each bar represents the average of three replicates, and error bars indicate the standard deviation.

Journal: Microbiology Spectrum

Article Title: Transformation of Gardnerella vaginalis with a Bifidobacterium-Escherichia coli shuttle vector plasmid

doi: 10.1128/spectrum.00481-25

Figure Lengend Snippet: Plasmid stability. G. vaginalis with pKO403- lacZ′- Sp was grown in the presence or absence of spectinomycin (as indicated in the legend) for 18 h or 24 h and then plated in CBA with and without spectinomycin. Colony-forming units on selective and non-selective media were counted to calculate the proportion of Sp R bacteria. Each bar represents the average of three replicates, and error bars indicate the standard deviation.

Article Snippet: Plasmid pKO403- lacZ′- Sp was purchased from Addgene (Cat# 174726) ( ).

Techniques: Plasmid Preparation, Bacteria, Standard Deviation