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Promega palter-1 vector
Palter 1 Vector, supplied by Promega, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/palter-1+vector/palter+vector/pmc03126765-70-20-22
Average 90 stars, based on 1 article reviews
palter-1 vector - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Mutagenesis:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Plasmid Preparation:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Sequencing:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Binding Assay:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Clone Assay:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Polymerase Chain Reaction:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Generated:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

Construct:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.

In Vitro:

Article Title: Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.
Article Snippet: Morimoto K, Gosselink J, Kartono A, Hogg JC, Hayashi S, Ogawa E. Adenovirus E1A regulates lung epithelial ICAM-1 expression by interacting with transcriptional regulators at its promoter.. Am J Physiol Lung Cell Mol Physiol 296: L361–L371, 2009.. First published December 26, 2008; doi:10.1152/ajplung.90331.2008.—We focused on the regulation of inflammatory mediator expression by adenovirus E1A in lung epithelial cells and the role of this viral protein in the pathogenesis of chronic obstructive pulmonary disease (COPD).

Article Title: Proposed structural mechanism of Escherichia coli cAMP receptor protein cAMP-dependent proteolytic cleavage protection and selective and nonselective DNA binding.
Article Snippet: The Escherichia coli cAMP receptor protein (CRP) displays biphasic characteristics in protease and â-galactosidase induction assays at increasing cAMP concentrations in response to ligand binding at the secondary binding site located between the primary binding site and the DNA binding domain.. Two mutants were created to determine the mechanistic reason for the CRP biphasic response by inhibiting binding of cAMP to the secondary site via interference with the Arg 181 interaction with the ligand’s phosphate.. The S179A/R180D/E181H mutant binds two cAMP molecules per dimer, does not exhibit a biphasic response, lacks selective DNA binding, and has inhibited nonselective DNA binding.

Article Title: Cell viability and secretion of active proteins in Schizosaccharomyces pombe do not require the chaperone function of calnexin
Article Snippet: Plasmid pSPCA3262 (∆gly cnx1) was constructed by site- directed mutagenesis using the Altered Sites II in vitro Mutagenesis System and the pALTER-1 vector (Promega), according to the manufacturer’s recommendations.

Article Title: Molecular determinants of cAMP-mediated regulation of the Na+-Ca2+ exchanger expressed in human cell lines
Article Snippet: The sarcolemmal Na–Ca family of proteins (NCX) appear to have evolved throughout the biosphere, from cyanobacteria and yeasts to humans, with the function of removing Ca from the cytosol in exchange for Na (Reuter & Seitz, 1968; Baker et al. 1969).. This electrogenic transport process is driven exclusively by the electrochemical gradients of Na and Ca, which also appear to allosterically regulate intracellular Ca-sensing sites for activation (DiPolo, 1979), and Na sites for inactivation of the exchanger (Hilgemann, 1990).. While this regulatory framework is generally conserved among species, other aspects of regulation of NCX appear to vary significantly from species to species or within an individual species, where functional diversity of NCX is produced by multiple genes (NCX1, NCX2, NCX3), each of which is expressed as tissue-specific splice variants (Quednau et al. 1997).

Article Title: Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life
Article Snippet: A mutation creating E 70 K as well as a Dra I restriction enzyme cleavage site was introduced into a pAlter-1 vector (Promega) harboring the Pst 1 - Hind III fragment of pOJ75 (the nucleotide sequence encoding the N-terminal part of the human PiT1 protein) using the primer 5'-GACAGAGCCCACTGTTTTAAAGATGCTAGCTAG-3'.

Article Title: Role of Nuclear Factor Y in Stress-Induced Activation of the Herpes Simplex Virus Type 1 ICP0 Promoter
Article Snippet: To clone the fragment containing the ICP0 promoter into the pAlter-1 vector (Promega), the ICP0 promoter was excised from the pGL3 vector with SacI and NcoI, blunt ended, and ligated into the SmaI site in pAlter-1, and the insert was screened for orientation, yielding the wild-type template for subsequent mutagenesis, ICP0pAlter.

Article Title: Postrecruitment Function of Yeast Med6 Protein during the Transcriptional Activation by Mediator Complex
Article Snippet: The MED6 gene harboring own promoter and terminator regions was obtained from pRS316-MED6 by EcoRI-XbaI digestion and subcloned into the pALTER-1 vector (Promega) for site-directed mutagenesis according to the manufacturer's instructions.



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Strains and Plasmids

Journal: Biochemistry

Article Title: Role of Conserved Aspartates in the ArsA ATPase †

doi: 10.1021/bi800715h

Figure Lengend Snippet: Strains and Plasmids

Article Snippet: Ampicillin (125 μ g/mL), tetracycline (12.5 μ g/mL), and IPTG (0.1 mM) were added as required. table ft1 table-wrap mode="anchored" t5 caption a7 strain/plasmid genotype/description ref E. coli strains ES1301 mutS lac Z53, mut S201::Tn5, thy A36, rha -5, met B1, deo C, IN (rrn D -rrn E ) Promega JM109 end A1, rec A1, gyr A9 6, thi, hsd R17 (rk−, mk+), rel A1, sup E44, λ −, Δ( lac - pro AB), [F′, tra D36, pro AB, lac I q ZΔM15] 14 plasmids pALTER-1 cloning and mutagenesis vector, Tc r , Ap s Promega pALTER-B 1.3 kb Hin dIII– Kpn I fragment containing the arsB gene cloned into the multiple cloning sites of pALTER-1 ( arsB ), Tc r , Ap s ( 30 ) pTZ3H6 arsA gene with only Trp 159 codon remaining and with six histidine codons added to 3′-end ( arsA H6 B ), Tc s , Ap r ( 15 ) pD142A site-directed mutagenesis of Asp 142 codon to alanine codon in arsA gene of pTZ3H6 ( arsA D142A B ), Tc r , Ap r this study pD142E site-directed mutagenesis of Asp 142 codon to glutamate codon in arsA gene of pTZ3H6 ( arsA D142E B ), Tc r , Ap r this study pD142N site-directed mutagenesis of Asp 142 codon to asparagine codon in arsA gene of pTZ3H6 ( arsA D142N B ), Tc r , Ap r this study pD447A site-directed mutagenesis of Asp 447 codon to alanine codon in arsA gene of pTZ3H6 ( arsA D447A B ), Tc r , Ap r this study pD447E site-directed mutagenesis of Asp 447 codon to glutamate codon in arsA gene of pTZ3H6 ( arsA D447E B ), Tc r , Ap r this study pD447N site-directed mutagenesis of Asp 447 codon to asparagine codon in arsA gene of pTZ3H6 ( arsA D447N B ), Tcr , Ap r this study Open in a separate window Strains and Plasmids

Techniques: Clone Assay, Mutagenesis, Plasmid Preparation

Resistance to arsenite in cells expressing wild type and altered ArsA proteins. Overnight cultures of E. coli strain JM109 bearing wild type and mutant ars plasmids were diluted 100-fold into fresh Luria–Bertani medium containing the indicated concentrations of sodium arsenite. Expression of the ars genes was induced with 0.1 mM IPTG. After 5 h of growth at 37 °C, the optical density at 600 nm was measured. Cells contained the following plasmids. Panel A: (▼) pTZ3H6 (arsAB), (△) pD142A (arsAD142AB), (■) pD142E (arsAD142EB), (□) pD142N (arsAD142NB), (○) pALTER-B (arsB), and (●) vector plasmid pALTER-1. Panel B: (▼) pTZ3H6 (arsAB), (△) pD447A (arsAD447AB), (■) pD447E (arsAD447EB), (□) pD447N (arsAD447NB), (○) pALTER-B (arsB), and (●) vector plasmid pALTER-1.

Journal: Biochemistry

Article Title: Role of Conserved Aspartates in the ArsA ATPase †

doi: 10.1021/bi800715h

Figure Lengend Snippet: Resistance to arsenite in cells expressing wild type and altered ArsA proteins. Overnight cultures of E. coli strain JM109 bearing wild type and mutant ars plasmids were diluted 100-fold into fresh Luria–Bertani medium containing the indicated concentrations of sodium arsenite. Expression of the ars genes was induced with 0.1 mM IPTG. After 5 h of growth at 37 °C, the optical density at 600 nm was measured. Cells contained the following plasmids. Panel A: (▼) pTZ3H6 (arsAB), (△) pD142A (arsAD142AB), (■) pD142E (arsAD142EB), (□) pD142N (arsAD142NB), (○) pALTER-B (arsB), and (●) vector plasmid pALTER-1. Panel B: (▼) pTZ3H6 (arsAB), (△) pD447A (arsAD447AB), (■) pD447E (arsAD447EB), (□) pD447N (arsAD447NB), (○) pALTER-B (arsB), and (●) vector plasmid pALTER-1.

Article Snippet: Ampicillin (125 μ g/mL), tetracycline (12.5 μ g/mL), and IPTG (0.1 mM) were added as required. table ft1 table-wrap mode="anchored" t5 caption a7 strain/plasmid genotype/description ref E. coli strains ES1301 mutS lac Z53, mut S201::Tn5, thy A36, rha -5, met B1, deo C, IN (rrn D -rrn E ) Promega JM109 end A1, rec A1, gyr A9 6, thi, hsd R17 (rk−, mk+), rel A1, sup E44, λ −, Δ( lac - pro AB), [F′, tra D36, pro AB, lac I q ZΔM15] 14 plasmids pALTER-1 cloning and mutagenesis vector, Tc r , Ap s Promega pALTER-B 1.3 kb Hin dIII– Kpn I fragment containing the arsB gene cloned into the multiple cloning sites of pALTER-1 ( arsB ), Tc r , Ap s ( 30 ) pTZ3H6 arsA gene with only Trp 159 codon remaining and with six histidine codons added to 3′-end ( arsA H6 B ), Tc s , Ap r ( 15 ) pD142A site-directed mutagenesis of Asp 142 codon to alanine codon in arsA gene of pTZ3H6 ( arsA D142A B ), Tc r , Ap r this study pD142E site-directed mutagenesis of Asp 142 codon to glutamate codon in arsA gene of pTZ3H6 ( arsA D142E B ), Tc r , Ap r this study pD142N site-directed mutagenesis of Asp 142 codon to asparagine codon in arsA gene of pTZ3H6 ( arsA D142N B ), Tc r , Ap r this study pD447A site-directed mutagenesis of Asp 447 codon to alanine codon in arsA gene of pTZ3H6 ( arsA D447A B ), Tc r , Ap r this study pD447E site-directed mutagenesis of Asp 447 codon to glutamate codon in arsA gene of pTZ3H6 ( arsA D447E B ), Tc r , Ap r this study pD447N site-directed mutagenesis of Asp 447 codon to asparagine codon in arsA gene of pTZ3H6 ( arsA D447N B ), Tcr , Ap r this study Open in a separate window Strains and Plasmids

Techniques: Expressing, Mutagenesis, Plasmid Preparation