Review



palmtracer software plugin for  (MetaMorph Inc)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    MetaMorph Inc palmtracer software plugin for
    Palmtracer Software Plugin For, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/palmtracer+plugin/palmtracer+plugin/pm39047728-793-6-10
    Average 90 stars, based on 1 article reviews
    palmtracer software plugin for - by Bioz Stars, 2026-09
    90/100 stars

    Images

    Related Articles

    Imaging:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Expressing:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Variant Assay:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Mutagenesis:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Fluorescence:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Derivative Assay:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Software:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Microscopy:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Recombinant:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Cell Culture:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s

    Inverted Microscopy:

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas
    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables. .. F

    Article Title: Endogenous β-neurexins on axons and within synapses show regulated dynamic behavior.
    Article Snippet: (1:200, precoupled to Oyster550, Synaptic Systems) or VGAT (1:200, Oyster550, Synaptic Systems) was used before QD or nanobody labeling. .. Single QDs and nanobodies were tracked using either custom-made MATLAB-based software (Groc et al., 2007) or the PALMTracer plugin from MetaMorph developed by J.-B. .. Siberita (IINS Bordeaux), respectively.

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity
    Article Snippet: (20 ms) SMT raw image stacks were cropped in ImageJ prior to analysis to reduce their file size and therefore minimize analysis time. .. Fast SMT data was then analyzed using the PalmTracer plugin developed for Metamorph by the Sibarita group at the University of Bordeaux ( ). .. As described by Bademosi and colleagues , here we used PalmTracer to localize and track molecules in order to obtain their trajectories, a

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: It can be easily detected in contrast inverted pseudocolor mode where high fluorescence intensity regions are color coded. b. .. Open file menu and select run user program to open the PALMTracer plugin running inside MetaMorph ( A and 9B). .. Note: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ).

    Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons
    Article Snippet: PALMTracer is a multimodal super resolution image analysis module developed as a plugin of MetaMorph ( ). .. Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. .. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer s



    Similar Products

    palmtracer software plugin for  (MetaMorph Inc)
    90
    MetaMorph Inc palmtracer software plugin for
    Palmtracer Software Plugin For, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/palmtracer+plugin/palmtracer+plugin/pm39047728-793-6-10
    Average 90 stars, based on 1 article reviews
    palmtracer software plugin for - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    palmtracer plugin  (MetaMorph Inc)
    90
    MetaMorph Inc palmtracer plugin
    PALM imaging of an F-type ATPase in Mycoplasma mycoides subsp. capri . M. mycoides subsp. capri mEos3.2-0575 cells, expressing a mEos-fused variant of the β-subunit of the ATPase F 1-like domain, were imaged by PALM. In this M. mycoides subsp. capri mutant, the fluorescent fusion protein is expressed from the native genomic locus and replaces the wild-type variant. The data presented here correspond to a single representative field of view (512 by 512 pixels; pixel size = 160 nm). (A) Sample images of M. mycoides subsp. capri mEos3.2-0575 cells. For each field of view, the images correspond to epifluorescence (diffraction limited) (top), superresolved reconstruction (40-nm pixel) (middle), and Tesseler segmentation (bottom). Scale bar = 1 μm. (B) Tesseler clustering of the fluorescence signal. The number of clusters per Tesseler-segmented object was computed. The bar graphs display the distribution of the numbers of clusters per object. (C) Object and cluster sizes. The dot plot presents the area (in nm 2 ) of each object and cluster segmented by Tesseler, to which a boxplot showing the median, interquartile range, minimum, and maximum values is overlaid. The median value of each data set is indicated. (D) Evaluation of the PALM imaging pointing accuracy. Inset, example of the tracks computed using <t>PALMTracer</t> from which the MSD 0 and pointing accuracy values are derived. The bar graphs display the distribution of the pointing accuracies derived from each track. The median value of the data set is indicated.
    Palmtracer Plugin, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/palmtracer+plugin/palmtracer+plugin/pmc09241803-229-1-4
    Average 90 stars, based on 1 article reviews
    palmtracer plugin - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    palmtracer plugin under  (MetaMorph Inc)
    90
    MetaMorph Inc palmtracer plugin under
    PALM imaging of an F-type ATPase in Mycoplasma mycoides subsp. capri . M. mycoides subsp. capri mEos3.2-0575 cells, expressing a mEos-fused variant of the β-subunit of the ATPase F 1-like domain, were imaged by PALM. In this M. mycoides subsp. capri mutant, the fluorescent fusion protein is expressed from the native genomic locus and replaces the wild-type variant. The data presented here correspond to a single representative field of view (512 by 512 pixels; pixel size = 160 nm). (A) Sample images of M. mycoides subsp. capri mEos3.2-0575 cells. For each field of view, the images correspond to epifluorescence (diffraction limited) (top), superresolved reconstruction (40-nm pixel) (middle), and Tesseler segmentation (bottom). Scale bar = 1 μm. (B) Tesseler clustering of the fluorescence signal. The number of clusters per Tesseler-segmented object was computed. The bar graphs display the distribution of the numbers of clusters per object. (C) Object and cluster sizes. The dot plot presents the area (in nm 2 ) of each object and cluster segmented by Tesseler, to which a boxplot showing the median, interquartile range, minimum, and maximum values is overlaid. The median value of each data set is indicated. (D) Evaluation of the PALM imaging pointing accuracy. Inset, example of the tracks computed using <t>PALMTracer</t> from which the MSD 0 and pointing accuracy values are derived. The bar graphs display the distribution of the pointing accuracies derived from each track. The median value of the data set is indicated.
    Palmtracer Plugin Under, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/palmtracer+plugin/palmtracer+plugin/pmc09241803-76-17-20
    Average 90 stars, based on 1 article reviews
    palmtracer plugin under - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    metamorph plugin palmtracer  (MetaMorph Inc)
    90
    MetaMorph Inc metamorph plugin palmtracer
    List of software, algorithms and publicly available datasets that were used in this manuscript
    Metamorph Plugin Palmtracer, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/palmtracer+plugin/palmtracer+plugin/pmc08565327-295-5-4
    Average 90 stars, based on 1 article reviews
    metamorph plugin palmtracer - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    PALM imaging of an F-type ATPase in Mycoplasma mycoides subsp. capri . M. mycoides subsp. capri mEos3.2-0575 cells, expressing a mEos-fused variant of the β-subunit of the ATPase F 1-like domain, were imaged by PALM. In this M. mycoides subsp. capri mutant, the fluorescent fusion protein is expressed from the native genomic locus and replaces the wild-type variant. The data presented here correspond to a single representative field of view (512 by 512 pixels; pixel size = 160 nm). (A) Sample images of M. mycoides subsp. capri mEos3.2-0575 cells. For each field of view, the images correspond to epifluorescence (diffraction limited) (top), superresolved reconstruction (40-nm pixel) (middle), and Tesseler segmentation (bottom). Scale bar = 1 μm. (B) Tesseler clustering of the fluorescence signal. The number of clusters per Tesseler-segmented object was computed. The bar graphs display the distribution of the numbers of clusters per object. (C) Object and cluster sizes. The dot plot presents the area (in nm 2 ) of each object and cluster segmented by Tesseler, to which a boxplot showing the median, interquartile range, minimum, and maximum values is overlaid. The median value of each data set is indicated. (D) Evaluation of the PALM imaging pointing accuracy. Inset, example of the tracks computed using PALMTracer from which the MSD 0 and pointing accuracy values are derived. The bar graphs display the distribution of the pointing accuracies derived from each track. The median value of the data set is indicated.

    Journal: Microbiology Spectrum

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas

    doi: 10.1128/spectrum.00645-22

    Figure Lengend Snippet: PALM imaging of an F-type ATPase in Mycoplasma mycoides subsp. capri . M. mycoides subsp. capri mEos3.2-0575 cells, expressing a mEos-fused variant of the β-subunit of the ATPase F 1-like domain, were imaged by PALM. In this M. mycoides subsp. capri mutant, the fluorescent fusion protein is expressed from the native genomic locus and replaces the wild-type variant. The data presented here correspond to a single representative field of view (512 by 512 pixels; pixel size = 160 nm). (A) Sample images of M. mycoides subsp. capri mEos3.2-0575 cells. For each field of view, the images correspond to epifluorescence (diffraction limited) (top), superresolved reconstruction (40-nm pixel) (middle), and Tesseler segmentation (bottom). Scale bar = 1 μm. (B) Tesseler clustering of the fluorescence signal. The number of clusters per Tesseler-segmented object was computed. The bar graphs display the distribution of the numbers of clusters per object. (C) Object and cluster sizes. The dot plot presents the area (in nm 2 ) of each object and cluster segmented by Tesseler, to which a boxplot showing the median, interquartile range, minimum, and maximum values is overlaid. The median value of each data set is indicated. (D) Evaluation of the PALM imaging pointing accuracy. Inset, example of the tracks computed using PALMTracer from which the MSD 0 and pointing accuracy values are derived. The bar graphs display the distribution of the pointing accuracies derived from each track. The median value of the data set is indicated.

    Article Snippet: The PALMTracer plugin for MetaMorph ( ) was used to process image stacks with a specific intensity threshold for each data set, to enable the generation of the localization tables.

    Techniques: Imaging, Expressing, Variant Assay, Mutagenesis, Fluorescence, Derivative Assay

    PALM imaging of an F-type ATPase in Mycoplasma mycoides subsp. capri . M. mycoides subsp. capri mEos3.2-0575 cells, expressing a mEos-fused variant of the β-subunit of the ATPase F 1-like domain, were imaged by PALM. In this M. mycoides subsp. capri mutant, the fluorescent fusion protein is expressed from the native genomic locus and replaces the wild-type variant. The data presented here correspond to a single representative field of view (512 by 512 pixels; pixel size = 160 nm). (A) Sample images of M. mycoides subsp. capri mEos3.2-0575 cells. For each field of view, the images correspond to epifluorescence (diffraction limited) (top), superresolved reconstruction (40-nm pixel) (middle), and Tesseler segmentation (bottom). Scale bar = 1 μm. (B) Tesseler clustering of the fluorescence signal. The number of clusters per Tesseler-segmented object was computed. The bar graphs display the distribution of the numbers of clusters per object. (C) Object and cluster sizes. The dot plot presents the area (in nm 2 ) of each object and cluster segmented by Tesseler, to which a boxplot showing the median, interquartile range, minimum, and maximum values is overlaid. The median value of each data set is indicated. (D) Evaluation of the PALM imaging pointing accuracy. Inset, example of the tracks computed using PALMTracer from which the MSD 0 and pointing accuracy values are derived. The bar graphs display the distribution of the pointing accuracies derived from each track. The median value of the data set is indicated.

    Journal: Microbiology Spectrum

    Article Title: Imaging Minimal Bacteria at the Nanoscale: a Reliable and Versatile Process to Perform Single-Molecule Localization Microscopy in Mycoplasmas

    doi: 10.1128/spectrum.00645-22

    Figure Lengend Snippet: PALM imaging of an F-type ATPase in Mycoplasma mycoides subsp. capri . M. mycoides subsp. capri mEos3.2-0575 cells, expressing a mEos-fused variant of the β-subunit of the ATPase F 1-like domain, were imaged by PALM. In this M. mycoides subsp. capri mutant, the fluorescent fusion protein is expressed from the native genomic locus and replaces the wild-type variant. The data presented here correspond to a single representative field of view (512 by 512 pixels; pixel size = 160 nm). (A) Sample images of M. mycoides subsp. capri mEos3.2-0575 cells. For each field of view, the images correspond to epifluorescence (diffraction limited) (top), superresolved reconstruction (40-nm pixel) (middle), and Tesseler segmentation (bottom). Scale bar = 1 μm. (B) Tesseler clustering of the fluorescence signal. The number of clusters per Tesseler-segmented object was computed. The bar graphs display the distribution of the numbers of clusters per object. (C) Object and cluster sizes. The dot plot presents the area (in nm 2 ) of each object and cluster segmented by Tesseler, to which a boxplot showing the median, interquartile range, minimum, and maximum values is overlaid. The median value of each data set is indicated. (D) Evaluation of the PALM imaging pointing accuracy. Inset, example of the tracks computed using PALMTracer from which the MSD 0 and pointing accuracy values are derived. The bar graphs display the distribution of the pointing accuracies derived from each track. The median value of the data set is indicated.

    Article Snippet: Based on the acquired image stacks, the localization of each individual fluorescence emitter was determined through the PALMTracer plugin under MetaMorph, and then superresolved images were reconstructed and analyzed by automatic Voronoï-based segmentation of these localizations ( , Fig. S2).

    Techniques: Imaging, Expressing, Variant Assay, Mutagenesis, Fluorescence, Derivative Assay

    List of software, algorithms and publicly available datasets that were used in this manuscript

    Journal: Nucleic Acids Research

    Article Title: A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity

    doi: 10.1093/nar/gkab820

    Figure Lengend Snippet: List of software, algorithms and publicly available datasets that were used in this manuscript

    Article Snippet: Here, we used the Metamorph plugin PalmTracer to obtain average diffusion coefficients for the bound and unbound fractions of SOX18 (0.02 μm /s and 0.43 μm /s) and SOX18 RaOp (0.02 and 0.27 μm /s).

    Techniques: Software, Microscopy, Fluorescence