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odefy  (MathWorks Inc)


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    MathWorks Inc odefy
    Odefy, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/odefy/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    odefy - by Bioz Stars, 2026-04
    90/100 stars

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    Plots of the TNF pathway node behaviors after the stimulation of Rigenera ® . The plot has been obtained with <t>Odefy</t> and it refers to the output of one Monte Carlo simulation. In detail, Rigenera ® autologous micro-graft targets in the pathway have been initialized to their expression values, while other network nodes are randomly set to 0 or 1 . The plot shows that the values of some genes, initially set to 0, have been increased by the Rigenera ® action, and vice versa. Panel ( a ) shows the behaviors of all network nodes; Panel ( b ) shows a subset of such node behaviors, in which Tnfrsf1a exhibits an increase, Itch a decrease, while Rigenera ® seems to not affect the behaviors of Traf2 and Jun (their output values are similar to the initial ones).
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    Plots of the TNF pathway node behaviors after the stimulation of Rigenera ® . The plot has been obtained with Odefy and it refers to the output of one Monte Carlo simulation. In detail, Rigenera ® autologous micro-graft targets in the pathway have been initialized to their expression values, while other network nodes are randomly set to 0 or 1 . The plot shows that the values of some genes, initially set to 0, have been increased by the Rigenera ® action, and vice versa. Panel ( a ) shows the behaviors of all network nodes; Panel ( b ) shows a subset of such node behaviors, in which Tnfrsf1a exhibits an increase, Itch a decrease, while Rigenera ® seems to not affect the behaviors of Traf2 and Jun (their output values are similar to the initial ones).

    Journal: Pharmaceuticals

    Article Title: Exploring Wound-Healing Genomic Machinery with a Network-Based Approach

    doi: 10.3390/ph10020055

    Figure Lengend Snippet: Plots of the TNF pathway node behaviors after the stimulation of Rigenera ® . The plot has been obtained with Odefy and it refers to the output of one Monte Carlo simulation. In detail, Rigenera ® autologous micro-graft targets in the pathway have been initialized to their expression values, while other network nodes are randomly set to 0 or 1 . The plot shows that the values of some genes, initially set to 0, have been increased by the Rigenera ® action, and vice versa. Panel ( a ) shows the behaviors of all network nodes; Panel ( b ) shows a subset of such node behaviors, in which Tnfrsf1a exhibits an increase, Itch a decrease, while Rigenera ® seems to not affect the behaviors of Traf2 and Jun (their output values are similar to the initial ones).

    Article Snippet: Simulations were performed using the MATLAB-toolbox Odefy [ ].

    Techniques: Expressing