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atcc msa 1003  (ATCC)


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    Structured Review

    ATCC atcc msa 1003
    The average relative abundance of two technical replicates +/- the standard deviation is shown for the <t>ATCC</t> <t>MSA-1003</t> (A) and the Mock20 (B) mock community. The category “True Misclassifications” reflects the percentage of reads assigned to species not present in the mock community, while category “Insufficient Resolution” reflects the percentage of reads assigned to species clusters (i.e., impossible to differentiate based on the genetic marker used). The color scale is logarithmic and represents the relative abundance of the taxa identified, ranging from 0.001% to 50%.
    Atcc Msa 1003, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 6314 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/msa/16S/bio_rxiv__64898__2026__05__15__725465-231-4-4
    Average 99 stars, based on 6314 article reviews
    atcc msa 1003 - by Bioz Stars, 2026-10
    99/100 stars

    Images

    1) Product Images from "A novel long-amplicon rpoB primer pair for high resolution microbiome analysis at the species-level"

    Article Title: A novel long-amplicon rpoB primer pair for high resolution microbiome analysis at the species-level

    Journal: bioRxiv

    doi: 10.64898/2026.05.15.725465

    The average relative abundance of two technical replicates +/- the standard deviation is shown for the ATCC MSA-1003 (A) and the Mock20 (B) mock community. The category “True Misclassifications” reflects the percentage of reads assigned to species not present in the mock community, while category “Insufficient Resolution” reflects the percentage of reads assigned to species clusters (i.e., impossible to differentiate based on the genetic marker used). The color scale is logarithmic and represents the relative abundance of the taxa identified, ranging from 0.001% to 50%.
    Figure Legend Snippet: The average relative abundance of two technical replicates +/- the standard deviation is shown for the ATCC MSA-1003 (A) and the Mock20 (B) mock community. The category “True Misclassifications” reflects the percentage of reads assigned to species not present in the mock community, while category “Insufficient Resolution” reflects the percentage of reads assigned to species clusters (i.e., impossible to differentiate based on the genetic marker used). The color scale is logarithmic and represents the relative abundance of the taxa identified, ranging from 0.001% to 50%.

    Techniques Used: Standard Deviation, Marker

    Related Articles

    Extraction:

    Article Title: High intensity perturbations induce an abrupt shift in soil microbial state
    Article Snippet: .. Alongside the samples, three extraction blanks were included and a mock community sample for each primer pair: 19 strains genomic DNA even mix from Bakker lab for fungi [ ], and MSA-1000 10 strain even mix genomic material for bacteria from the American Type Culture Collection (ATCC, Manassas, US). ..

    Bacteria:

    Article Title: High intensity perturbations induce an abrupt shift in soil microbial state
    Article Snippet: .. Alongside the samples, three extraction blanks were included and a mock community sample for each primer pair: 19 strains genomic DNA even mix from Bakker lab for fungi [ ], and MSA-1000 10 strain even mix genomic material for bacteria from the American Type Culture Collection (ATCC, Manassas, US). ..

    other:

    Article Title: Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS)
    Article Snippet: MSA-2002 was purchased from ATCC, Manassas, VA.

    Article Title: Optimization of a DNA extraction protocol for improving bacterial and fungal classification based on Nanopore sequencing.
    Article Snippet: Mycobiome whole cell mix; 2024. https://www.atcc.org/ products/msa-2010 64.

    Article Title: High-quality metagenome assembly from long accurate reads with metaMDBG.
    Article Snippet: ATCC mock reference genomes are available at https://www.atcc.org/ products/msa-1003.

    DNA Extraction:

    Article Title: Cholestasis impairs gut microbiota development and bile salt hydrolase activity in preterm neonates
    Article Snippet: Sequencing was performed on the Illumina NovaSeq S4 platform using the 150 bp paired-end read protocol (average sequencing depth = 41518559; minimum sequencing depth = 33936). .. Negative controls were tubes with reagents from DNA extraction and water only, and positive controls were from the MSA-2002 and MSA-1003 mock communities (ATCC). ..



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    The average relative abundance of two technical replicates +/- the standard deviation is shown for the <t>ATCC</t> <t>MSA-1003</t> (A) and the Mock20 (B) mock community. The category “True Misclassifications” reflects the percentage of reads assigned to species not present in the mock community, while category “Insufficient Resolution” reflects the percentage of reads assigned to species clusters (i.e., impossible to differentiate based on the genetic marker used). The color scale is logarithmic and represents the relative abundance of the taxa identified, ranging from 0.001% to 50%.
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    Image Search Results


    The average relative abundance of two technical replicates +/- the standard deviation is shown for the ATCC MSA-1003 (A) and the Mock20 (B) mock community. The category “True Misclassifications” reflects the percentage of reads assigned to species not present in the mock community, while category “Insufficient Resolution” reflects the percentage of reads assigned to species clusters (i.e., impossible to differentiate based on the genetic marker used). The color scale is logarithmic and represents the relative abundance of the taxa identified, ranging from 0.001% to 50%.

    Journal: bioRxiv

    Article Title: A novel long-amplicon rpoB primer pair for high resolution microbiome analysis at the species-level

    doi: 10.64898/2026.05.15.725465

    Figure Lengend Snippet: The average relative abundance of two technical replicates +/- the standard deviation is shown for the ATCC MSA-1003 (A) and the Mock20 (B) mock community. The category “True Misclassifications” reflects the percentage of reads assigned to species not present in the mock community, while category “Insufficient Resolution” reflects the percentage of reads assigned to species clusters (i.e., impossible to differentiate based on the genetic marker used). The color scale is logarithmic and represents the relative abundance of the taxa identified, ranging from 0.001% to 50%.

    Article Snippet: Relative abundance table for ATCC MSA-1003, with primers targeting the 16S rRNA gene.

    Techniques: Standard Deviation, Marker