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Addgene inc mruby2
A Schematic of the CRISPR/Cas9 genome editing strategy to endogenously tag UHRF1 with mAID/mClover and DNMT1 with <t>mAID/mRuby2.</t> B Order of events for the generation of the different cell lines. C Immunoblot images for validation of endogenous AID-tagged UHRF1 and/or DNMT1 HCT116 cells. Experiments in each panel were performed at least three times, and the representative results are shown. D Representative fluorescence images on UHRF1-AID/DNMT1-AID HCT116 cells showing that tagged UHRF1 and DNMT1 co-localize. E Quantification of the DNA methylation level in each HCT116 cell line with LUMA, LC-MS/MS, or WGBS. The p value is calculated with one-way ANOVA and Tukey’s HSD test (* p < 0.05). Data are presented as mean values +/− SEM from biological triplicates. Source data are provided as a Source Data file.
Mruby2, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 12 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mruby2+nt+c1/mRuby2-NT-C1+(Plasmid+%2354561)/pmc10997609-320-4-12
Average 92 stars, based on 12 article reviews
mruby2 - by Bioz Stars, 2026-09
92/100 stars

Images

1) Product Images from "Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells"

Article Title: Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells

Journal: Nature Communications

doi: 10.1038/s41467-024-47314-4

A Schematic of the CRISPR/Cas9 genome editing strategy to endogenously tag UHRF1 with mAID/mClover and DNMT1 with mAID/mRuby2. B Order of events for the generation of the different cell lines. C Immunoblot images for validation of endogenous AID-tagged UHRF1 and/or DNMT1 HCT116 cells. Experiments in each panel were performed at least three times, and the representative results are shown. D Representative fluorescence images on UHRF1-AID/DNMT1-AID HCT116 cells showing that tagged UHRF1 and DNMT1 co-localize. E Quantification of the DNA methylation level in each HCT116 cell line with LUMA, LC-MS/MS, or WGBS. The p value is calculated with one-way ANOVA and Tukey’s HSD test (* p < 0.05). Data are presented as mean values +/− SEM from biological triplicates. Source data are provided as a Source Data file.
Figure Legend Snippet: A Schematic of the CRISPR/Cas9 genome editing strategy to endogenously tag UHRF1 with mAID/mClover and DNMT1 with mAID/mRuby2. B Order of events for the generation of the different cell lines. C Immunoblot images for validation of endogenous AID-tagged UHRF1 and/or DNMT1 HCT116 cells. Experiments in each panel were performed at least three times, and the representative results are shown. D Representative fluorescence images on UHRF1-AID/DNMT1-AID HCT116 cells showing that tagged UHRF1 and DNMT1 co-localize. E Quantification of the DNA methylation level in each HCT116 cell line with LUMA, LC-MS/MS, or WGBS. The p value is calculated with one-way ANOVA and Tukey’s HSD test (* p < 0.05). Data are presented as mean values +/− SEM from biological triplicates. Source data are provided as a Source Data file.

Techniques Used: CRISPR, Western Blot, Biomarker Discovery, Fluorescence, DNA Methylation Assay, Liquid Chromatography with Mass Spectroscopy

Related Articles

Imaging:

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: MEF lines stably expressing fluorescent fusion proteins were prepared as follows: Expression plasmids were transiently transfected into Phoenix ecotropic packaging cells using Fugene 6 (Roche). .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile* .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile*

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: .. Imaging constructs were generated using PCR amplification of sequences encoding the fluorescent proteins mNeonGreen (Allele Biotechnology), pBabe (LTR)-cytochrome c-GFP [gift from D. Green (25): Addgene plasmid 41183], pTRIPCMV-GFP-FLAG-cGAS [gift from N. Manel (73): Addgene plasmid 86675], mRuby2-NT-C1 [gift from M. Davidson (74): Addgene plasmid 54561], pCytERM-mScarlet-N1 [gift from D. Gadella (75): Addgene plasmid 85066] mCherry, tdTomato (gift from D. C. S. Huang), or the HaloTag (Promega). .. These were cloned into anMSCV-IRES-hygromycin orMSCV-IRES-puromycin construct (a hygromycin/ puromycin selectable retroviral vector) such that they were fused either N-terminally to BAK or BAX (murine coding sequences, gifts from D. Huang) or C-terminally to the matrix targeting sequence from OTC, DMAC1 (gift from M. Ryan), TFAM (OriGene NM_009360), or TOMM20 (GenScript synthesis NM_014765.2) sequences.

Construct:

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: MEF lines stably expressing fluorescent fusion proteins were prepared as follows: Expression plasmids were transiently transfected into Phoenix ecotropic packaging cells using Fugene 6 (Roche). .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile* .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile*

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: .. Imaging constructs were generated using PCR amplification of sequences encoding the fluorescent proteins mNeonGreen (Allele Biotechnology), pBabe (LTR)-cytochrome c-GFP [gift from D. Green (25): Addgene plasmid 41183], pTRIPCMV-GFP-FLAG-cGAS [gift from N. Manel (73): Addgene plasmid 86675], mRuby2-NT-C1 [gift from M. Davidson (74): Addgene plasmid 54561], pCytERM-mScarlet-N1 [gift from D. Gadella (75): Addgene plasmid 85066] mCherry, tdTomato (gift from D. C. S. Huang), or the HaloTag (Promega). .. These were cloned into anMSCV-IRES-hygromycin orMSCV-IRES-puromycin construct (a hygromycin/ puromycin selectable retroviral vector) such that they were fused either N-terminally to BAK or BAX (murine coding sequences, gifts from D. Huang) or C-terminally to the matrix targeting sequence from OTC, DMAC1 (gift from M. Ryan), TFAM (OriGene NM_009360), or TOMM20 (GenScript synthesis NM_014765.2) sequences.

Generated:

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: MEF lines stably expressing fluorescent fusion proteins were prepared as follows: Expression plasmids were transiently transfected into Phoenix ecotropic packaging cells using Fugene 6 (Roche). .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile* .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile*

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: .. Imaging constructs were generated using PCR amplification of sequences encoding the fluorescent proteins mNeonGreen (Allele Biotechnology), pBabe (LTR)-cytochrome c-GFP [gift from D. Green (25): Addgene plasmid 41183], pTRIPCMV-GFP-FLAG-cGAS [gift from N. Manel (73): Addgene plasmid 86675], mRuby2-NT-C1 [gift from M. Davidson (74): Addgene plasmid 54561], pCytERM-mScarlet-N1 [gift from D. Gadella (75): Addgene plasmid 85066] mCherry, tdTomato (gift from D. C. S. Huang), or the HaloTag (Promega). .. These were cloned into anMSCV-IRES-hygromycin orMSCV-IRES-puromycin construct (a hygromycin/ puromycin selectable retroviral vector) such that they were fused either N-terminally to BAK or BAX (murine coding sequences, gifts from D. Huang) or C-terminally to the matrix targeting sequence from OTC, DMAC1 (gift from M. Ryan), TFAM (OriGene NM_009360), or TOMM20 (GenScript synthesis NM_014765.2) sequences.

Polymerase Chain Reaction:

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: MEF lines stably expressing fluorescent fusion proteins were prepared as follows: Expression plasmids were transiently transfected into Phoenix ecotropic packaging cells using Fugene 6 (Roche). .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile* .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile*

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: .. Imaging constructs were generated using PCR amplification of sequences encoding the fluorescent proteins mNeonGreen (Allele Biotechnology), pBabe (LTR)-cytochrome c-GFP [gift from D. Green (25): Addgene plasmid 41183], pTRIPCMV-GFP-FLAG-cGAS [gift from N. Manel (73): Addgene plasmid 86675], mRuby2-NT-C1 [gift from M. Davidson (74): Addgene plasmid 54561], pCytERM-mScarlet-N1 [gift from D. Gadella (75): Addgene plasmid 85066] mCherry, tdTomato (gift from D. C. S. Huang), or the HaloTag (Promega). .. These were cloned into anMSCV-IRES-hygromycin orMSCV-IRES-puromycin construct (a hygromycin/ puromycin selectable retroviral vector) such that they were fused either N-terminally to BAK or BAX (murine coding sequences, gifts from D. Huang) or C-terminally to the matrix targeting sequence from OTC, DMAC1 (gift from M. Ryan), TFAM (OriGene NM_009360), or TOMM20 (GenScript synthesis NM_014765.2) sequences.

Amplification:

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: MEF lines stably expressing fluorescent fusion proteins were prepared as follows: Expression plasmids were transiently transfected into Phoenix ecotropic packaging cells using Fugene 6 (Roche). .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile* .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile*

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: .. Imaging constructs were generated using PCR amplification of sequences encoding the fluorescent proteins mNeonGreen (Allele Biotechnology), pBabe (LTR)-cytochrome c-GFP [gift from D. Green (25): Addgene plasmid 41183], pTRIPCMV-GFP-FLAG-cGAS [gift from N. Manel (73): Addgene plasmid 86675], mRuby2-NT-C1 [gift from M. Davidson (74): Addgene plasmid 54561], pCytERM-mScarlet-N1 [gift from D. Gadella (75): Addgene plasmid 85066] mCherry, tdTomato (gift from D. C. S. Huang), or the HaloTag (Promega). .. These were cloned into anMSCV-IRES-hygromycin orMSCV-IRES-puromycin construct (a hygromycin/ puromycin selectable retroviral vector) such that they were fused either N-terminally to BAK or BAX (murine coding sequences, gifts from D. Huang) or C-terminally to the matrix targeting sequence from OTC, DMAC1 (gift from M. Ryan), TFAM (OriGene NM_009360), or TOMM20 (GenScript synthesis NM_014765.2) sequences.

Plasmid Preparation:

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: MEF lines stably expressing fluorescent fusion proteins were prepared as follows: Expression plasmids were transiently transfected into Phoenix ecotropic packaging cells using Fugene 6 (Roche). .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile* .. Kate McArthur,* Lachlan W. Whitehead, John M. Heddleston, Lucy Li, Benjamin S. Padman, Viola Oorschot, Niall D. Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin, Rachael M. Lane, Marija Dramicanin, Tahnee L. Saunders, Canny Sugiana, Romina Lessene, Laura D. Osellame, Teng-Leong Chew, Grant Dewson, Michael Lazarou, Georg Ramm, Guillaume Lessene, Michael T. Ryan, Kelly L. Rogers, Mark F. van Delft, Benjamin T. Kile*

Article Title: BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Article Snippet: .. Imaging constructs were generated using PCR amplification of sequences encoding the fluorescent proteins mNeonGreen (Allele Biotechnology), pBabe (LTR)-cytochrome c-GFP [gift from D. Green (25): Addgene plasmid 41183], pTRIPCMV-GFP-FLAG-cGAS [gift from N. Manel (73): Addgene plasmid 86675], mRuby2-NT-C1 [gift from M. Davidson (74): Addgene plasmid 54561], pCytERM-mScarlet-N1 [gift from D. Gadella (75): Addgene plasmid 85066] mCherry, tdTomato (gift from D. C. S. Huang), or the HaloTag (Promega). .. These were cloned into anMSCV-IRES-hygromycin orMSCV-IRES-puromycin construct (a hygromycin/ puromycin selectable retroviral vector) such that they were fused either N-terminally to BAK or BAX (murine coding sequences, gifts from D. Huang) or C-terminally to the matrix targeting sequence from OTC, DMAC1 (gift from M. Ryan), TFAM (OriGene NM_009360), or TOMM20 (GenScript synthesis NM_014765.2) sequences.



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Addgene inc mruby2
A Schematic of the CRISPR/Cas9 genome editing strategy to endogenously tag UHRF1 with mAID/mClover and DNMT1 with <t>mAID/mRuby2.</t> B Order of events for the generation of the different cell lines. C Immunoblot images for validation of endogenous AID-tagged UHRF1 and/or DNMT1 HCT116 cells. Experiments in each panel were performed at least three times, and the representative results are shown. D Representative fluorescence images on UHRF1-AID/DNMT1-AID HCT116 cells showing that tagged UHRF1 and DNMT1 co-localize. E Quantification of the DNA methylation level in each HCT116 cell line with LUMA, LC-MS/MS, or WGBS. The p value is calculated with one-way ANOVA and Tukey’s HSD test (* p < 0.05). Data are presented as mean values +/− SEM from biological triplicates. Source data are provided as a Source Data file.
Mruby2, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mruby2+nt+c1/mRuby2-NT-C1+(Plasmid+%2354561)/pmc10997609-320-4-12
Average 92 stars, based on 1 article reviews
mruby2 - by Bioz Stars, 2026-09
92/100 stars
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Image Search Results


A Schematic of the CRISPR/Cas9 genome editing strategy to endogenously tag UHRF1 with mAID/mClover and DNMT1 with mAID/mRuby2. B Order of events for the generation of the different cell lines. C Immunoblot images for validation of endogenous AID-tagged UHRF1 and/or DNMT1 HCT116 cells. Experiments in each panel were performed at least three times, and the representative results are shown. D Representative fluorescence images on UHRF1-AID/DNMT1-AID HCT116 cells showing that tagged UHRF1 and DNMT1 co-localize. E Quantification of the DNA methylation level in each HCT116 cell line with LUMA, LC-MS/MS, or WGBS. The p value is calculated with one-way ANOVA and Tukey’s HSD test (* p < 0.05). Data are presented as mean values +/− SEM from biological triplicates. Source data are provided as a Source Data file.

Journal: Nature Communications

Article Title: Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells

doi: 10.1038/s41467-024-47314-4

Figure Lengend Snippet: A Schematic of the CRISPR/Cas9 genome editing strategy to endogenously tag UHRF1 with mAID/mClover and DNMT1 with mAID/mRuby2. B Order of events for the generation of the different cell lines. C Immunoblot images for validation of endogenous AID-tagged UHRF1 and/or DNMT1 HCT116 cells. Experiments in each panel were performed at least three times, and the representative results are shown. D Representative fluorescence images on UHRF1-AID/DNMT1-AID HCT116 cells showing that tagged UHRF1 and DNMT1 co-localize. E Quantification of the DNA methylation level in each HCT116 cell line with LUMA, LC-MS/MS, or WGBS. The p value is calculated with one-way ANOVA and Tukey’s HSD test (* p < 0.05). Data are presented as mean values +/− SEM from biological triplicates. Source data are provided as a Source Data file.

Article Snippet: In order to incorporate mRuby2, we replaced mCherry2 in the donor plasmid (Addgene #121180).

Techniques: CRISPR, Western Blot, Biomarker Discovery, Fluorescence, DNA Methylation Assay, Liquid Chromatography with Mass Spectroscopy