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Novogene mirna microarray analysis
Differentially expressed <t>miRNA</t> in exosomes from tuberculous pleural effusion and transudative pleural effusion (as control) by miRNAs sequencing. A Heatmap of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients; n = 9. RPKM values are represented by gradient colors and shown for each sample. Red represents a higher RPKM; blue represents a lower RPKM. Results are based on nine RNA sequencing samples. B Venn diagram showing the overlap between differentially expressed miRNAs in TPE exosomes and transudate exosomes. C Volcanic map of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients. Adjusted P value < 0.05 and fold change > 1 was set as restrictive conditions to identify the differentially expressed genes. D Pathway enrichment analysis showed the significant target genes of differentially expressed miRNAs associated with various KEGG pathways. E The expression of three differentially expressed miRNAs in TPE exosomes and transudate exosomes was verified by RT-qPCR and normalized by the U6. Data are expressed as mean ± SEM. n = 6, **** P < 0.0001 (Paired student’s t-test)
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1) Product Images from "Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis"

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis

Journal: Respiratory Research

doi: 10.1186/s12931-026-03541-5

Differentially expressed miRNA in exosomes from tuberculous pleural effusion and transudative pleural effusion (as control) by miRNAs sequencing. A Heatmap of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients; n = 9. RPKM values are represented by gradient colors and shown for each sample. Red represents a higher RPKM; blue represents a lower RPKM. Results are based on nine RNA sequencing samples. B Venn diagram showing the overlap between differentially expressed miRNAs in TPE exosomes and transudate exosomes. C Volcanic map of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients. Adjusted P value < 0.05 and fold change > 1 was set as restrictive conditions to identify the differentially expressed genes. D Pathway enrichment analysis showed the significant target genes of differentially expressed miRNAs associated with various KEGG pathways. E The expression of three differentially expressed miRNAs in TPE exosomes and transudate exosomes was verified by RT-qPCR and normalized by the U6. Data are expressed as mean ± SEM. n = 6, **** P < 0.0001 (Paired student’s t-test)
Figure Legend Snippet: Differentially expressed miRNA in exosomes from tuberculous pleural effusion and transudative pleural effusion (as control) by miRNAs sequencing. A Heatmap of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients; n = 9. RPKM values are represented by gradient colors and shown for each sample. Red represents a higher RPKM; blue represents a lower RPKM. Results are based on nine RNA sequencing samples. B Venn diagram showing the overlap between differentially expressed miRNAs in TPE exosomes and transudate exosomes. C Volcanic map of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients. Adjusted P value < 0.05 and fold change > 1 was set as restrictive conditions to identify the differentially expressed genes. D Pathway enrichment analysis showed the significant target genes of differentially expressed miRNAs associated with various KEGG pathways. E The expression of three differentially expressed miRNAs in TPE exosomes and transudate exosomes was verified by RT-qPCR and normalized by the U6. Data are expressed as mean ± SEM. n = 6, **** P < 0.0001 (Paired student’s t-test)

Techniques Used: Control, Sequencing, Expressing, RNA Sequencing, Quantitative RT-PCR

miR-503-5p regulated Smurf1/Smad7 signaling pathway. A , B Venn diagram showing overlap between differentially up-regulated miRNAs in TPE exosomes and miRNAs targeting Smurf1 or Smad7 predicted by the miRTarBase. The online analysis database “miRTarBase” ( https://miRTarBase.cuhk.edu.cn/ ) was used. C Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6. D - E Human PMCs were transfected with miR-25-3p mimics or miR-503-5p mimics or miR-92a-3p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which intracellular mRNA levels of Smurf1 were measured by RT-qPCR and normalized to GAPDH ( D ). The protein expression of Smurf1 and TGF-β receptor (TGFBR) were detected by western blotting. Bar graphs revealed changes in relative ratio of Smurf1 and TGFBR to GAPDH. F Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which mRNA expression of Smurf1, TGFBR and COL1A1 were detected by qRT-PCR. G Human PMCs were incubated with miR-503-5p mimics. After 24 h, Smurf1 protein was detected by immunofluorescence staining and nuclei with DAPI staining. Bar scale: 50 μm. H - K Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h. miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6 ( H ). The protein expression of S Smurf1, TGFBR and COL1A1 were detected by western blotting ( I ). Bar graphs revealed changes in the relative ratio to GAPDH ( J ). mRNA levels of S Smurf1, TGFBR and COL1A1 were measured by RT-qPCR and normalized to GAPDH ( K ). Data are mean ± SEM. n = 3. * P < 0.05 (student’s t-test)
Figure Legend Snippet: miR-503-5p regulated Smurf1/Smad7 signaling pathway. A , B Venn diagram showing overlap between differentially up-regulated miRNAs in TPE exosomes and miRNAs targeting Smurf1 or Smad7 predicted by the miRTarBase. The online analysis database “miRTarBase” ( https://miRTarBase.cuhk.edu.cn/ ) was used. C Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6. D - E Human PMCs were transfected with miR-25-3p mimics or miR-503-5p mimics or miR-92a-3p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which intracellular mRNA levels of Smurf1 were measured by RT-qPCR and normalized to GAPDH ( D ). The protein expression of Smurf1 and TGF-β receptor (TGFBR) were detected by western blotting. Bar graphs revealed changes in relative ratio of Smurf1 and TGFBR to GAPDH. F Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which mRNA expression of Smurf1, TGFBR and COL1A1 were detected by qRT-PCR. G Human PMCs were incubated with miR-503-5p mimics. After 24 h, Smurf1 protein was detected by immunofluorescence staining and nuclei with DAPI staining. Bar scale: 50 μm. H - K Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h. miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6 ( H ). The protein expression of S Smurf1, TGFBR and COL1A1 were detected by western blotting ( I ). Bar graphs revealed changes in the relative ratio to GAPDH ( J ). mRNA levels of S Smurf1, TGFBR and COL1A1 were measured by RT-qPCR and normalized to GAPDH ( K ). Data are mean ± SEM. n = 3. * P < 0.05 (student’s t-test)

Techniques Used: Transfection, Negative Control, Expressing, Quantitative RT-PCR, Western Blot, Incubation, Immunofluorescence, Staining

Triple miRNAs inhibitor attenuated TPE-Exo induced pleural fibrosis. C57BL/6 mice were intra-pleural injected by using PBS (100 µl/mouse), TPE-Exo (100 µl/mouse), TPE-Exo plus control inhibitor, or TPE-Exo plus triple miRNAs inhibitor with carbon particles (0.1 mg/mouse) as descriptions in the Methods. TPE-Exo from 50 ml TPE was administered at days 1, 5, 9. In TPE-Exo plus triple miRNAs inhibitor group, TPE-Exo was co-incubated with triple miRNAs inhibitor which restrained expressions of miR-150-3p, miR-424-3p and miR-503-5p. All mice were euthanized at day 21, and tissues were taken for analysis. A Representative Masson’s trichrome staining images of visceral pleura from lung sections, parietal pleura from chest wall and diaphragm sections. Original magnification, ×400. B Changes in pleural thickness. C Changes in collagen percentages of visceral and parietal pleura. Data are expressed as mean ± SEM. n = 6 mice. *** P < 0.001 (One-way ANOVA followed by the Bonferroni’s test)
Figure Legend Snippet: Triple miRNAs inhibitor attenuated TPE-Exo induced pleural fibrosis. C57BL/6 mice were intra-pleural injected by using PBS (100 µl/mouse), TPE-Exo (100 µl/mouse), TPE-Exo plus control inhibitor, or TPE-Exo plus triple miRNAs inhibitor with carbon particles (0.1 mg/mouse) as descriptions in the Methods. TPE-Exo from 50 ml TPE was administered at days 1, 5, 9. In TPE-Exo plus triple miRNAs inhibitor group, TPE-Exo was co-incubated with triple miRNAs inhibitor which restrained expressions of miR-150-3p, miR-424-3p and miR-503-5p. All mice were euthanized at day 21, and tissues were taken for analysis. A Representative Masson’s trichrome staining images of visceral pleura from lung sections, parietal pleura from chest wall and diaphragm sections. Original magnification, ×400. B Changes in pleural thickness. C Changes in collagen percentages of visceral and parietal pleura. Data are expressed as mean ± SEM. n = 6 mice. *** P < 0.001 (One-way ANOVA followed by the Bonferroni’s test)

Techniques Used: Injection, Control, Incubation, Staining

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Article Snippet: .. Small-RNA sequencing and miRNA data analysis of the SMSC-EXOs, Sr-SMSC-EXOs, and Si-Sr-SMSC-EXOs groups were conducted by Novogene (Beijing, China). ..

Article Title: Strontium-Alix interaction enhances exosomal miRNA selectively loading in synovial MSCs for temporomandibular joint osteoarthritis treatment.
Article Snippet: .. Sequencing and data analysis Small-RNA sequencing and miRNA data analysis of the SMSC-EXOs, Sr-SMSC-EXOs, and Si-Sr-SMSC-EXOs groups were conducted by Novogene (Beijing, China). ..

Article Title: Macrophage Notch1 signaling modulates regulatory T cells via the TGFB axis in early MASLD.
Article Snippet: .. Briefly, the supernatant was collected after culturing bone marrow-derived macrophages (BMDMs) in Exo-free medium for 48 h. Exos were isolated via five sequential centrifugation steps at 4 C: (1) 10 min at 300 × g to remove cells; (2) JHEP Reports, January 10 min at 2,000 × g to remove cell debris; (3) 30 min at 10,000 × g to break organelles; (4) ultracentrifugation at 100,000 × g for 120 min to pellet exosomes; and (5) washing with a large amount of ice-cold PBS and ultracentrifuge at 100,000 g for 120 min. Exos were then resuspended in PBS and stored at −80 C until use. miRNA sequencing and data analysis miRNA sequencing was done on RNA from BMDMs-Exos by Novogene (Beijing, China). ..

Article Title: Macrophage Notch1 signaling modulates regulatory T cells via the TGFB axis in early MASLD
Article Snippet: .. Briefly, the supernatant was collected after culturing bone marrow-derived macrophages (BMDMs) in Exo-free medium for 48 h. Exos were isolated via five sequential centrifugation steps at 4 C: (1) 10 min at 300 × g to remove cells; (2) JHEP Reports, --- 2 10 min at 2,000 × g to remove cell debris; (3) 30 min at 10,000 × g to break organelles; (4) ultracentrifugation at 100,000 × g for 120 min to pellet exosomes; and (5) washing with a large amount of ice-cold PBS and ultracentrifuge at 100,000 g for 120 min. Exos were then resuspended in PBS and stored at −80 C until use. miRNA sequencing and data analysis miRNA sequencing was done on RNA from BMDMs-Exos by Novogene (Beijing, China). ..

other:

Article Title: Integrating multiomics sequencing analyses uncover the key mechanisms related to oxidative stress, mitochondria, and immune cells in keloid.
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Isolation:

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis
Article Snippet: Images were acquired using the same exposure settings and further processed with ZEN software (Carl Zeiss). .. Exosomes from pleural effusion were obtained by ultracentrifugation of samples isolated from nine control individuals and nine patients with tuberculous pleurisy patients and processed by Novogene Co., Ltd (Beijing, China) for miRNA microarray analysis (lllumina SE50). ..

Article Title: Macrophage Notch1 signaling modulates regulatory T cells via the TGFB axis in early MASLD.
Article Snippet: .. Briefly, the supernatant was collected after culturing bone marrow-derived macrophages (BMDMs) in Exo-free medium for 48 h. Exos were isolated via five sequential centrifugation steps at 4 C: (1) 10 min at 300 × g to remove cells; (2) JHEP Reports, January 10 min at 2,000 × g to remove cell debris; (3) 30 min at 10,000 × g to break organelles; (4) ultracentrifugation at 100,000 × g for 120 min to pellet exosomes; and (5) washing with a large amount of ice-cold PBS and ultracentrifuge at 100,000 g for 120 min. Exos were then resuspended in PBS and stored at −80 C until use. miRNA sequencing and data analysis miRNA sequencing was done on RNA from BMDMs-Exos by Novogene (Beijing, China). ..

Article Title: Macrophage Notch1 signaling modulates regulatory T cells via the TGFB axis in early MASLD
Article Snippet: .. Briefly, the supernatant was collected after culturing bone marrow-derived macrophages (BMDMs) in Exo-free medium for 48 h. Exos were isolated via five sequential centrifugation steps at 4 C: (1) 10 min at 300 × g to remove cells; (2) JHEP Reports, --- 2 10 min at 2,000 × g to remove cell debris; (3) 30 min at 10,000 × g to break organelles; (4) ultracentrifugation at 100,000 × g for 120 min to pellet exosomes; and (5) washing with a large amount of ice-cold PBS and ultracentrifuge at 100,000 g for 120 min. Exos were then resuspended in PBS and stored at −80 C until use. miRNA sequencing and data analysis miRNA sequencing was done on RNA from BMDMs-Exos by Novogene (Beijing, China). ..

Control:

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis
Article Snippet: Images were acquired using the same exposure settings and further processed with ZEN software (Carl Zeiss). .. Exosomes from pleural effusion were obtained by ultracentrifugation of samples isolated from nine control individuals and nine patients with tuberculous pleurisy patients and processed by Novogene Co., Ltd (Beijing, China) for miRNA microarray analysis (lllumina SE50). ..

Microarray:

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis
Article Snippet: Images were acquired using the same exposure settings and further processed with ZEN software (Carl Zeiss). .. Exosomes from pleural effusion were obtained by ultracentrifugation of samples isolated from nine control individuals and nine patients with tuberculous pleurisy patients and processed by Novogene Co., Ltd (Beijing, China) for miRNA microarray analysis (lllumina SE50). ..

Centrifugation:

Article Title: Macrophage Notch1 signaling modulates regulatory T cells via the TGFB axis in early MASLD.
Article Snippet: .. Briefly, the supernatant was collected after culturing bone marrow-derived macrophages (BMDMs) in Exo-free medium for 48 h. Exos were isolated via five sequential centrifugation steps at 4 C: (1) 10 min at 300 × g to remove cells; (2) JHEP Reports, January 10 min at 2,000 × g to remove cell debris; (3) 30 min at 10,000 × g to break organelles; (4) ultracentrifugation at 100,000 × g for 120 min to pellet exosomes; and (5) washing with a large amount of ice-cold PBS and ultracentrifuge at 100,000 g for 120 min. Exos were then resuspended in PBS and stored at −80 C until use. miRNA sequencing and data analysis miRNA sequencing was done on RNA from BMDMs-Exos by Novogene (Beijing, China). ..

Article Title: Macrophage Notch1 signaling modulates regulatory T cells via the TGFB axis in early MASLD
Article Snippet: .. Briefly, the supernatant was collected after culturing bone marrow-derived macrophages (BMDMs) in Exo-free medium for 48 h. Exos were isolated via five sequential centrifugation steps at 4 C: (1) 10 min at 300 × g to remove cells; (2) JHEP Reports, --- 2 10 min at 2,000 × g to remove cell debris; (3) 30 min at 10,000 × g to break organelles; (4) ultracentrifugation at 100,000 × g for 120 min to pellet exosomes; and (5) washing with a large amount of ice-cold PBS and ultracentrifuge at 100,000 g for 120 min. Exos were then resuspended in PBS and stored at −80 C until use. miRNA sequencing and data analysis miRNA sequencing was done on RNA from BMDMs-Exos by Novogene (Beijing, China). ..



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Image Search Results


HExos alleviate EMT-like changes through miR-486a-5p ( A – C ) miRNA profiling: Heatmap/volcano plot of 38/130 miRNAs in HExos; qRT-PCR validation of top 10 (including miR-486a-5p) n = 3 ( D – E ). miR-486a-5p expression: Consistently higher in LPS+HExos n = 3 ( F – H ) Functional rescue: miR-486a-5p mimics attenuated apoptosis and modulated EMT markers (WB/RT-PCR) n = 3. Data are presented as the mean ± SD. from three independent experiments, * p < 0.05

Journal: Respiratory Research

Article Title: Hypoxia-preconditioned mesenchymal stromal cell–derived exosomes attenuate LPS-induced acute lung injury and early epithelial remodeling in mice: evidence for a miR-486a-5p–Skp2–GATA4 axis

doi: 10.1186/s12931-026-03560-2

Figure Lengend Snippet: HExos alleviate EMT-like changes through miR-486a-5p ( A – C ) miRNA profiling: Heatmap/volcano plot of 38/130 miRNAs in HExos; qRT-PCR validation of top 10 (including miR-486a-5p) n = 3 ( D – E ). miR-486a-5p expression: Consistently higher in LPS+HExos n = 3 ( F – H ) Functional rescue: miR-486a-5p mimics attenuated apoptosis and modulated EMT markers (WB/RT-PCR) n = 3. Data are presented as the mean ± SD. from three independent experiments, * p < 0.05

Article Snippet: For mRNA, cDNA was synthesized with PrimeScript RT reagent (Takara, Japan) and qPCR performed using SYBR Premix Ex Taq (Takara) on QuantStudio 5 (Thermo Fisher, USA). miRNA analysis employed miRcute kits (Tiangen, China; #DP501 for isolation, #KR211 for cDNA) with LightCycler ® 96 (Roche) using SYBR Green Master Mix (#FP411).

Techniques: Quantitative RT-PCR, Biomarker Discovery, Expressing, Functional Assay, Reverse Transcription Polymerase Chain Reaction

Differentially expressed miRNA in exosomes from tuberculous pleural effusion and transudative pleural effusion (as control) by miRNAs sequencing. A Heatmap of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients; n = 9. RPKM values are represented by gradient colors and shown for each sample. Red represents a higher RPKM; blue represents a lower RPKM. Results are based on nine RNA sequencing samples. B Venn diagram showing the overlap between differentially expressed miRNAs in TPE exosomes and transudate exosomes. C Volcanic map of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients. Adjusted P value < 0.05 and fold change > 1 was set as restrictive conditions to identify the differentially expressed genes. D Pathway enrichment analysis showed the significant target genes of differentially expressed miRNAs associated with various KEGG pathways. E The expression of three differentially expressed miRNAs in TPE exosomes and transudate exosomes was verified by RT-qPCR and normalized by the U6. Data are expressed as mean ± SEM. n = 6, **** P < 0.0001 (Paired student’s t-test)

Journal: Respiratory Research

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis

doi: 10.1186/s12931-026-03541-5

Figure Lengend Snippet: Differentially expressed miRNA in exosomes from tuberculous pleural effusion and transudative pleural effusion (as control) by miRNAs sequencing. A Heatmap of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients; n = 9. RPKM values are represented by gradient colors and shown for each sample. Red represents a higher RPKM; blue represents a lower RPKM. Results are based on nine RNA sequencing samples. B Venn diagram showing the overlap between differentially expressed miRNAs in TPE exosomes and transudate exosomes. C Volcanic map of differential exosomes miRNAs expression in pleural effusion between control individuals and tuberculous pleurisy patients. Adjusted P value < 0.05 and fold change > 1 was set as restrictive conditions to identify the differentially expressed genes. D Pathway enrichment analysis showed the significant target genes of differentially expressed miRNAs associated with various KEGG pathways. E The expression of three differentially expressed miRNAs in TPE exosomes and transudate exosomes was verified by RT-qPCR and normalized by the U6. Data are expressed as mean ± SEM. n = 6, **** P < 0.0001 (Paired student’s t-test)

Article Snippet: Exosomes from pleural effusion were obtained by ultracentrifugation of samples isolated from nine control individuals and nine patients with tuberculous pleurisy patients and processed by Novogene Co., Ltd (Beijing, China) for miRNA microarray analysis (lllumina SE50).

Techniques: Control, Sequencing, Expressing, RNA Sequencing, Quantitative RT-PCR

miR-503-5p regulated Smurf1/Smad7 signaling pathway. A , B Venn diagram showing overlap between differentially up-regulated miRNAs in TPE exosomes and miRNAs targeting Smurf1 or Smad7 predicted by the miRTarBase. The online analysis database “miRTarBase” ( https://miRTarBase.cuhk.edu.cn/ ) was used. C Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6. D - E Human PMCs were transfected with miR-25-3p mimics or miR-503-5p mimics or miR-92a-3p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which intracellular mRNA levels of Smurf1 were measured by RT-qPCR and normalized to GAPDH ( D ). The protein expression of Smurf1 and TGF-β receptor (TGFBR) were detected by western blotting. Bar graphs revealed changes in relative ratio of Smurf1 and TGFBR to GAPDH. F Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which mRNA expression of Smurf1, TGFBR and COL1A1 were detected by qRT-PCR. G Human PMCs were incubated with miR-503-5p mimics. After 24 h, Smurf1 protein was detected by immunofluorescence staining and nuclei with DAPI staining. Bar scale: 50 μm. H - K Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h. miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6 ( H ). The protein expression of S Smurf1, TGFBR and COL1A1 were detected by western blotting ( I ). Bar graphs revealed changes in the relative ratio to GAPDH ( J ). mRNA levels of S Smurf1, TGFBR and COL1A1 were measured by RT-qPCR and normalized to GAPDH ( K ). Data are mean ± SEM. n = 3. * P < 0.05 (student’s t-test)

Journal: Respiratory Research

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis

doi: 10.1186/s12931-026-03541-5

Figure Lengend Snippet: miR-503-5p regulated Smurf1/Smad7 signaling pathway. A , B Venn diagram showing overlap between differentially up-regulated miRNAs in TPE exosomes and miRNAs targeting Smurf1 or Smad7 predicted by the miRTarBase. The online analysis database “miRTarBase” ( https://miRTarBase.cuhk.edu.cn/ ) was used. C Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6. D - E Human PMCs were transfected with miR-25-3p mimics or miR-503-5p mimics or miR-92a-3p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which intracellular mRNA levels of Smurf1 were measured by RT-qPCR and normalized to GAPDH ( D ). The protein expression of Smurf1 and TGF-β receptor (TGFBR) were detected by western blotting. Bar graphs revealed changes in relative ratio of Smurf1 and TGFBR to GAPDH. F Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h, after which mRNA expression of Smurf1, TGFBR and COL1A1 were detected by qRT-PCR. G Human PMCs were incubated with miR-503-5p mimics. After 24 h, Smurf1 protein was detected by immunofluorescence staining and nuclei with DAPI staining. Bar scale: 50 μm. H - K Human PMCs were transfected with miR-503-5p mimics (50 nmol/ml) or negative control (NC) for 24 h. miR-503-5p expression levels in cells were determined by qRT-PCR and normalized by the U6 ( H ). The protein expression of S Smurf1, TGFBR and COL1A1 were detected by western blotting ( I ). Bar graphs revealed changes in the relative ratio to GAPDH ( J ). mRNA levels of S Smurf1, TGFBR and COL1A1 were measured by RT-qPCR and normalized to GAPDH ( K ). Data are mean ± SEM. n = 3. * P < 0.05 (student’s t-test)

Article Snippet: Exosomes from pleural effusion were obtained by ultracentrifugation of samples isolated from nine control individuals and nine patients with tuberculous pleurisy patients and processed by Novogene Co., Ltd (Beijing, China) for miRNA microarray analysis (lllumina SE50).

Techniques: Transfection, Negative Control, Expressing, Quantitative RT-PCR, Western Blot, Incubation, Immunofluorescence, Staining

Triple miRNAs inhibitor attenuated TPE-Exo induced pleural fibrosis. C57BL/6 mice were intra-pleural injected by using PBS (100 µl/mouse), TPE-Exo (100 µl/mouse), TPE-Exo plus control inhibitor, or TPE-Exo plus triple miRNAs inhibitor with carbon particles (0.1 mg/mouse) as descriptions in the Methods. TPE-Exo from 50 ml TPE was administered at days 1, 5, 9. In TPE-Exo plus triple miRNAs inhibitor group, TPE-Exo was co-incubated with triple miRNAs inhibitor which restrained expressions of miR-150-3p, miR-424-3p and miR-503-5p. All mice were euthanized at day 21, and tissues were taken for analysis. A Representative Masson’s trichrome staining images of visceral pleura from lung sections, parietal pleura from chest wall and diaphragm sections. Original magnification, ×400. B Changes in pleural thickness. C Changes in collagen percentages of visceral and parietal pleura. Data are expressed as mean ± SEM. n = 6 mice. *** P < 0.001 (One-way ANOVA followed by the Bonferroni’s test)

Journal: Respiratory Research

Article Title: Exosomal microRNAs of tuberculous pleural effusion orchestrating TGF-β signaling mediate pleural fibrosis

doi: 10.1186/s12931-026-03541-5

Figure Lengend Snippet: Triple miRNAs inhibitor attenuated TPE-Exo induced pleural fibrosis. C57BL/6 mice were intra-pleural injected by using PBS (100 µl/mouse), TPE-Exo (100 µl/mouse), TPE-Exo plus control inhibitor, or TPE-Exo plus triple miRNAs inhibitor with carbon particles (0.1 mg/mouse) as descriptions in the Methods. TPE-Exo from 50 ml TPE was administered at days 1, 5, 9. In TPE-Exo plus triple miRNAs inhibitor group, TPE-Exo was co-incubated with triple miRNAs inhibitor which restrained expressions of miR-150-3p, miR-424-3p and miR-503-5p. All mice were euthanized at day 21, and tissues were taken for analysis. A Representative Masson’s trichrome staining images of visceral pleura from lung sections, parietal pleura from chest wall and diaphragm sections. Original magnification, ×400. B Changes in pleural thickness. C Changes in collagen percentages of visceral and parietal pleura. Data are expressed as mean ± SEM. n = 6 mice. *** P < 0.001 (One-way ANOVA followed by the Bonferroni’s test)

Article Snippet: Exosomes from pleural effusion were obtained by ultracentrifugation of samples isolated from nine control individuals and nine patients with tuberculous pleurisy patients and processed by Novogene Co., Ltd (Beijing, China) for miRNA microarray analysis (lllumina SE50).

Techniques: Injection, Control, Incubation, Staining

Results of a microarray analysis. Eight miRNAs were significantly downregulated in the patients with functional dyspepsia (FD) compared to those in healthy controls using method 1. However, six miRNAs were downregulated using method 2. Notably, five miRNAs were consistently downregulated between the two methods. Furthermore, five miRNAs and seven miRNAs were significantly upregulated using methods 1 and 2, respectively. Therefore, four miRNAs were consistently upregulated in patients with FD.

Journal: Internal Medicine

Article Title: Exosomal hsa-miR-3649 and hsa-miR-202-3p in Gastric Juice as Potential Biomarkers for Functional Dyspepsia with a Previous Helicobacter pylori Infection

doi: 10.2169/internalmedicine.6047-25

Figure Lengend Snippet: Results of a microarray analysis. Eight miRNAs were significantly downregulated in the patients with functional dyspepsia (FD) compared to those in healthy controls using method 1. However, six miRNAs were downregulated using method 2. Notably, five miRNAs were consistently downregulated between the two methods. Furthermore, five miRNAs and seven miRNAs were significantly upregulated using methods 1 and 2, respectively. Therefore, four miRNAs were consistently upregulated in patients with FD.

Article Snippet: An miRNA microarray analysis of the discovery cohort was performed using 3D-Gene R (Toray Industries, Tokyo, Japan), as described in our previous report ( ).

Techniques: Microarray, Functional Assay