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genego metacore  (GeneGo Inc)

 
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    Structured Review

    GeneGo Inc genego metacore
    Genego Metacore, supplied by GeneGo Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/metacore/genego+metacore/pm40581639-251-22-22
    Average 90 stars, based on 1 article reviews
    genego metacore - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: DSG2 attenuates gemcitabine efficacy through PTX3 in lung adenocarcinoma.
    Article Snippet: Lung adenocarcinoma (LUAD) is the most prevalent subtype of lung cancer, often diagnosed at an advanced stage with poor prognosis and limited treatment options.. The Desmoglein (DSG) family plays a crucial role in maintaining cell adhesion and tissue integrity.. Upregulation of DSG proteins has been implicated in tumorigenesis, invasion, and metastasis across various cancers.

    Biomarker Discovery:

    Article Title: Integration of multi-omics and single-cell transcriptome reveals mitochondrial outer membrane protein-2 (MTX-2) as a prognostic biomarker and characterizes ubiquinone metabolism in lung adenocarcinoma
    Article Snippet: .. Afterward, MetaCore ( https://portal.genego.com ) was used to explore biomarker networks and cell signaling pathways, as we previous described , . .. The A549 human lung alveolar type II epithelial cell line, generously provided by Prof. Chiou-Feng Lin of Taipei Medical University - , was cultured in Dulbecco's modified Eagle medium (DMEM) (90-113-PB, Corning International, Taipei City, Taiwan) with 10% fetal bovine serum (Avantor, Singapore) and 1% penicillin/streptomycin (Corning).

    Functional Assay:

    Article Title: Ferroptosis-inducing compounds synergize with docetaxel to overcome chemoresistance in docetaxel-resistant non-small cell lung cancer cells.
    Article Snippet: Development of resistance to therapy-induced cell death is a major hurdle in the effective treatment of advanced solid tumors.. Erastin and RSL3 were originally found to induce synthetic lethality by induction of a novel form of cell death termed ferroptosis.. Emerging evidence suggests that ferroptosis inducers enhance chemosensitivity of classic therapeutic agents by triggering ferroptotic cell death.



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    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) <t>MetaCore</t> process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.
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    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) <t>MetaCore</t> process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.
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    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) <t>MetaCore</t> process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.
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    <t>MetaCore</t> TM analysis of protein interactions. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network showing the Adiponectin Receptor 1 (AdipoR1)-Notch-Cyclin D1 ( p -value > 1.733 × 10 −8 ) interaction. Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph displays the significant biological processes of the hub proteins present in the network.
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    Image Search Results


    Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) MetaCore process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.

    Journal: bioRxiv

    Article Title: Dystrophin Dp71 is essential for the development and function of macrophages

    doi: 10.1101/2025.04.24.650386

    Figure Lengend Snippet: Proteomics analysis of BMM. (A) Rank plot displaying protein expression differences between DMD and control mice. Black dots represent significantly expressed proteins, while grey dots represent not-significantly expressed proteins. (B) Volcano plot depicting MS results, with proteins coloured in red having a Log2 DMD/Control ratio of > 1.5 and -log10(P) of >10, and proteins coloured in blue having a Log2 DMD/Control ratio of < −1.5 and -log10(P) of >10. (C) Principal component analysis using the reporter ion log 2 ratios of all analysed proteins showing mdx βgeo BMM having a distinct proteomic profile and higher heterogeneity compared to C57BL/6 BMMs. (D) MetaCore process network analysis showing that process networks related to cell adhesion, phagocytosis, cell cycle and cytoskeleton were over-represented in mdx βgeo BMM.

    Article Snippet: Protein ratios were transformed to log 2 -ratios and significant changes were determined by the permutation test followed by LIMMA for bioinformatics analysis with MetaCore software (GeneGo).

    Techniques: Expressing, Control

    MetaCore TM analysis of protein interactions. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network showing the Adiponectin Receptor 1 (AdipoR1)-Notch-Cyclin D1 ( p -value > 1.733 × 10 −8 ) interaction. Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph displays the significant biological processes of the hub proteins present in the network.

    Journal: Cells

    Article Title: Adiponectin Influences the Behavior of Stem Cells in Hormone-Resistant Breast Cancer

    doi: 10.3390/cells14040286

    Figure Lengend Snippet: MetaCore TM analysis of protein interactions. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network showing the Adiponectin Receptor 1 (AdipoR1)-Notch-Cyclin D1 ( p -value > 1.733 × 10 −8 ) interaction. Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph displays the significant biological processes of the hub proteins present in the network.

    Article Snippet: For network and enrichment analysis, we used MetaCore TM (GeneGo, Clarivate Analytics, London, UK) software, a knowledge database suitable for pathway analysis of experimental data and gene lists.

    Techniques: Control

    MetaCore TM interaction network analysis. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network evidencing the BID-Notch-AdipoR1 interaction ( p -value > 1.80 × 10 −8 ). Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph shows the significant biological processes of the hub proteins present in the network.

    Journal: Cells

    Article Title: Adiponectin Influences the Behavior of Stem Cells in Hormone-Resistant Breast Cancer

    doi: 10.3390/cells14040286

    Figure Lengend Snippet: MetaCore TM interaction network analysis. Protein–protein interaction network for DEPs in TR MCF-7 cells obtained from adiponectin-treated secondary-generation mammospheres compared to untreated cells (control, C). ( A ) MetaCore TM analysis of the network evidencing the BID-Notch-AdipoR1 interaction ( p -value > 1.80 × 10 −8 ). Blue circles indicate downregulated proteins, while red circles mark upregulated proteins. ( B ) Enrichment analysis using the most significant GO annotations according to biological processes. The bar graph shows the significant biological processes of the hub proteins present in the network.

    Article Snippet: For network and enrichment analysis, we used MetaCore TM (GeneGo, Clarivate Analytics, London, UK) software, a knowledge database suitable for pathway analysis of experimental data and gene lists.

    Techniques: Control