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simbiology of matlab software package  (MathWorks Inc)


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    MathWorks Inc simbiology of matlab software package
    Simbiology Of Matlab Software Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/matlab+simbiology+package/us11684676-750-16-18
    Average 90 stars, based on 1 article reviews
    simbiology of matlab software package - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Observation of the time-course for peptidoglycan lipid intermediate II polymerization by Staphylococcus aureus monofunctional transglycosylase.
    Article Snippet: Each model was described by differential equations governed by explicit reactions, which were based on the mass-action law (see Supporting Information S5–S7), and expressed in the Matlab SimBiology package.

    Article Title: Switching On Depression and Potentiation in the Cerebellum.
    Article Snippet: The complete differential equation model (ModelDB: 235376) was built in a modular fashion, consisting of a single well-mixed compartment containing seven integratedmodules (in addition to other regulatory components; Figure 1): (1) AMPAR trafficking model (2) Calcium model, including metabotropic glutamate receptor (mGluR) and inositol trisphosphate receptor (IP3R) (3) Postsynaptic positive feedback loop with phosphatase regulation (4) CaMKII model with regulatory components (5) NO/cGMP pathway (6) NO/NSF/PICK-1 model to implement LTP (7) Presynaptic cascade to activate NOS (via CB1R) The complete model was implemented in the MATLAB Simbiology package using the ODE15s solver and comprised 531 species, 358 reaction parameters, and 1,120 individual reactions (Figure 1).

    Article Title: Observation of the time-course for peptidoglycan lipid intermediate II polymerization by Staphylococcus aureus monofunctional transglycosylase.
    Article Snippet: Each kinetic model was expressed in the Matlab SimBiology package, using the graphical interface package.

    Article Title: Non-Linear Reaction-Diffusion of Oxygen in Biological Systems
    Article Snippet: Nucleus oxygen N * H,O Fe(III) —\ pa DNA Damage Figure 5.3: Schematic representation of water radiolysis model. Simulation was performed using MATLAB SimBiology package.

    Article Title: Teaching dynamic mechanisms in signaling pathways using computational simulations
    Article Snippet: Multiple stochastic simulation algorithms (SSA) are provided in MATLAB SimBiology package such as Gillespie exact stochastic simulation algorithm (Gillespie, 1977), and τ-leap based method (Gillespie, 2001).



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    Computational techniques for dimensionality reduction and mechanistic understanding of single-cell heterogeneous signaling data
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    Computational techniques for dimensionality reduction and mechanistic understanding of single-cell heterogeneous signaling data

    Journal: Current opinion in systems biology

    Article Title: Computational methods for characterizing and learning from heterogeneous cell signaling data

    doi: 10.1016/j.coisb.2021.04.009

    Figure Lengend Snippet: Computational techniques for dimensionality reduction and mechanistic understanding of single-cell heterogeneous signaling data

    Article Snippet: Simbiology MATLAB package, Hy3S [ 61 ], PySB Python package [ 43 ] [ 43 , 44 , 46 ] ODE modeling A set of deterministic species dynamics corresponding to each parameter set used by modeler.

    Techniques: Software, Activity Assay