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healthy brain tissue  (OriGene)


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    Structured Review

    OriGene healthy brain tissue
    Healthy Brain Tissue, supplied by OriGene, used in various techniques. Bioz Stars score: 94/100, based on 11 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/human+array/TissueScan%2C+Human+Brain+cDNA+Array/pm42236120-298-30-39
    Average 94 stars, based on 11 article reviews
    healthy brain tissue - by Bioz Stars, 2026-09
    94/100 stars

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    Related Articles

    Gene Knockout:

    Article Title: Tumor-intrinsic expression of signal regulatory protein α contributes to the suppression of anti-tumor immune responses.
    Article Snippet: .. For human melanoma SK-MEL-19 cells, we purchased the SIRP alpha (SIRPA) Human Gene Knockout Kit (CRISPR) from OriGene (Cat# SKU KN407315) and performed CRISPR following the manufacturer’s instructions. .. We further performed FACS-sorting to purify SIRPA-wild type (NTC) or knockout cells based on their surface expression of human SIRPα (BioLegend, Cat. # 372104).

    Article Title: Targeted delivery of glucocerebrosidase to lysosomes: The LYSOTAC (LYSOsome-TArgeting Chimera) technology
    Article Snippet: .. LIMP-2-deficient HEK293 cells were produced using a LIMPII (SCARB2) Human Gene Knockout Kit (CRISPR) (# KN402162 ; Origene, Rockville, MD, USA) according to the manufacturer’s instructions. ..

    CRISPR:

    Article Title: Tumor-intrinsic expression of signal regulatory protein α contributes to the suppression of anti-tumor immune responses.
    Article Snippet: .. For human melanoma SK-MEL-19 cells, we purchased the SIRP alpha (SIRPA) Human Gene Knockout Kit (CRISPR) from OriGene (Cat# SKU KN407315) and performed CRISPR following the manufacturer’s instructions. .. We further performed FACS-sorting to purify SIRPA-wild type (NTC) or knockout cells based on their surface expression of human SIRPα (BioLegend, Cat. # 372104).

    Article Title: Stabilization of cyclin D3 protein by CDKN1A (p21 Cip/Waf1 ) in butyrate-treated cells.
    Article Snippet: .. CRISPR/Cas9-mediated CCND3 C-terminal deletion in HCT116 cells ACCEPTED MANUSCRIPT AR TIC LE IN PR ES S ARTICLE IN PRESS We used the KN2.0 kit from Origene, which includes a donor cassette for a non-homology mediated CRISPR knockout, following the manufacturer’s instructions (https://www.origene.com/products/gene-expression/crisprcas9/knockout-kits). ..

    Article Title: Stabilization of cyclin D3 protein by CDKN1A (p21 Cip/Waf1 ) in butyrate-treated cells
    Article Snippet: The Caco-2 cell line was purchased from ATCC and cultured in DMEM (10,000 U Penicillin, 10 mg/ml Streptomycin, 20% FCS). .. We used the KN2.0 kit from Origene, which includes a donor cassette for a non-homology mediated CRISPR knockout, following the manufacturer’s instructions ( https://www.origene.com/products/gene-expression/crispr-cas9/knockout-kits ). ..

    Article Title: Targeted delivery of glucocerebrosidase to lysosomes: The LYSOTAC (LYSOsome-TArgeting Chimera) technology
    Article Snippet: .. LIMP-2-deficient HEK293 cells were produced using a LIMPII (SCARB2) Human Gene Knockout Kit (CRISPR) (# KN402162 ; Origene, Rockville, MD, USA) according to the manufacturer’s instructions. ..

    Knock-Out:

    Article Title: Stabilization of cyclin D3 protein by CDKN1A (p21 Cip/Waf1 ) in butyrate-treated cells.
    Article Snippet: .. CRISPR/Cas9-mediated CCND3 C-terminal deletion in HCT116 cells ACCEPTED MANUSCRIPT AR TIC LE IN PR ES S ARTICLE IN PRESS We used the KN2.0 kit from Origene, which includes a donor cassette for a non-homology mediated CRISPR knockout, following the manufacturer’s instructions (https://www.origene.com/products/gene-expression/crisprcas9/knockout-kits). ..

    Article Title: Stabilization of cyclin D3 protein by CDKN1A (p21 Cip/Waf1 ) in butyrate-treated cells
    Article Snippet: The Caco-2 cell line was purchased from ATCC and cultured in DMEM (10,000 U Penicillin, 10 mg/ml Streptomycin, 20% FCS). .. We used the KN2.0 kit from Origene, which includes a donor cassette for a non-homology mediated CRISPR knockout, following the manufacturer’s instructions ( https://www.origene.com/products/gene-expression/crispr-cas9/knockout-kits ). ..

    Software:

    Article Title: Novel CAR T cell blend targeting PDPN and GD2 to overcome glioblastoma heterogeneity.
    Article Snippet: Acquisitions were conducted using a Cytek Northern Lights system (Cytek). .. Subsequent data analysis was performed with the Data Analysis Software Suite for LEGENDplex. qPCR Pooled cDNA from healthy organs (Human MTC Panel I and II, Takara Bio, Kusatsu, Japan) and healthy brain tissue (TissueScan, Human Brain cDNA Array, HBRT501, OriGene, Rockyville, Maryland, USA) was analyzed for PDPN expression. .. Each sample was analyzed with the StepOnePlus Real- time PCR System using TaqMan PDPN Gene Expression Assays (Thermo Fisher Scientific, FAMMGB_PL, Hs00366766_m1) with GAPDH as an endogenous control (Thermo Fisher Scientific, VIC- MGB_PL, Hs99999905_m1).

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Real-time Polymerase Chain Reaction:

    Article Title: Novel CAR T cell blend targeting PDPN and GD2 to overcome glioblastoma heterogeneity.
    Article Snippet: Acquisitions were conducted using a Cytek Northern Lights system (Cytek). .. Subsequent data analysis was performed with the Data Analysis Software Suite for LEGENDplex. qPCR Pooled cDNA from healthy organs (Human MTC Panel I and II, Takara Bio, Kusatsu, Japan) and healthy brain tissue (TissueScan, Human Brain cDNA Array, HBRT501, OriGene, Rockyville, Maryland, USA) was analyzed for PDPN expression. .. Each sample was analyzed with the StepOnePlus Real- time PCR System using TaqMan PDPN Gene Expression Assays (Thermo Fisher Scientific, FAMMGB_PL, Hs00366766_m1) with GAPDH as an endogenous control (Thermo Fisher Scientific, VIC- MGB_PL, Hs99999905_m1).

    Expressing:

    Article Title: Novel CAR T cell blend targeting PDPN and GD2 to overcome glioblastoma heterogeneity.
    Article Snippet: Acquisitions were conducted using a Cytek Northern Lights system (Cytek). .. Subsequent data analysis was performed with the Data Analysis Software Suite for LEGENDplex. qPCR Pooled cDNA from healthy organs (Human MTC Panel I and II, Takara Bio, Kusatsu, Japan) and healthy brain tissue (TissueScan, Human Brain cDNA Array, HBRT501, OriGene, Rockyville, Maryland, USA) was analyzed for PDPN expression. .. Each sample was analyzed with the StepOnePlus Real- time PCR System using TaqMan PDPN Gene Expression Assays (Thermo Fisher Scientific, FAMMGB_PL, Hs00366766_m1) with GAPDH as an endogenous control (Thermo Fisher Scientific, VIC- MGB_PL, Hs99999905_m1).

    Protease Inhibitor:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Saline:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Milk:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Staining:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Centrifugation:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Enzyme-linked Immunosorbent Assay:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Protein Array:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Bicinchoninic Acid Protein Assay:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Microelectrode Array:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Recombinant:

    Article Title: Synaptophysin autoantibodies mediate synaptic dysfunction in cerebellar ataxia.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken anti-MAP2 Abcam CAT#: ab5392; RRID: AB_2138153 Rabbit anti-Na/K ATPase Invitrogen CAT#: MA5-32184; RRID: AB_2809472 Guinea pig anti-Synapsin 1 Synaptic Systems CAT#: 106 004; RRID: AB_1106784 Mouse anti-SYP BioTechne CAT#: MAB5555; RRID: AB_3658464 Mouse anti-SYP antibody Dako CAT#: GA66061-2; RRID: AB_3698021 Rabbit anti-vGLUT1/2 Synaptic Systems CAT#: 135 403; RRID: AB_887883 Rabbit anti-vGLUT1 Synaptic Systems CAT#: 135 303; RRID: AB_887875 Donkey anti-Mouse IgG – AF488 Thermos Fisher CAT#: A21202; RRID: AB_141607 Goat anti-Chicken IgY- AF594 Thermo Fisher CAT#: A11042; RRID: AB_2534099 Goat anti-Human IgG - AF488 Southern Biotech CAT#: 2049–30; RRID: AB_2795698 Goat anti-Human IgG – AF647 Thermo Fisher CAT#: A21445; RRID: AB_2535862 Mouse anti-Human IgG1 – biotinylated Southern biotech CAT#: 9052–08; RRID: AB_2796620 Mouse anti-Human IgG2 – biotinylated Southern biotech CAT#: 9060–08; RRID: AB_2796634 Mouse anti-Human IgG3 – biotinylated Southern biotech CAT#: 9210–08; RRID: AB_2796700 Mouse anti-Human IgG4 – biotinylated Southern biotech CAT#: 9200–08; RRID: AB_2796692 Rat anti-Mouse IgG - AF647 Jackson CAT#: 415-605-166; RRID: AB_2340285 Streptavidin IRDye 800 Licor CAT#: 926–32230 Bacterial and virus strains NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs C2987 Biological samples Human cerebellum whole lysate Novus Biologicals NB820-59180 Human cerebellum membrane lysate Novus Biologicals NB820-60572 EUROIMMUN Neurology Mosaic 17 (Primate cerebellar tissue sections) EUROIMMUN FB1111-1010-17 EUROIMMUN IIFT Glutamate Receptor Mosaik 3 (Rodent cerebellar tissue sections) EUROIMMUN FA111m-1003-3 Chemicals, peptides, and recombinant proteins 2-Mercaptoethanol ThermoFisher 31350010 2-Propanol (for Analysis) [(CH3)2CHOH] MW: 60.10 g/mol, CAS No. [67-63-0] Merck 1.09634.2511 4′,6-diamidino-2-phenylindole (DAPI) Thermo Fisher 62248 4% paraformaldehyde (PFA) Santa Cruz Biotechnology sc-281692 B27 ThermoFisher 17504044 BDNF R&D 248-BDB-005 Borate buffer (20×) ThermoFisher 28341 Bovine serum albumin (BSA) Sigma A3059 DAPT Biotechne 2634 DMEM - high glucose Sigma D5796 Doxycycline Sigma D9891 Ethanol absolut, EMSURE® [C2H5OH] MW: 46,07 g/mol, CAS No.[64-17-5] Merck 1.00983.2511 FBS Superior; standardized Fetal Bovine Serum Merck S0615 Fluorescence Mounting Medium Dako S3023 (Continued on next page) e1 Cell Reports Medicine 7, 102822, June 16, 2026 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Geltrex (Reduced GF) ThermoFisher A1413202 Glutamax ThermoFisher 35050061 HaltTM Protease Inhibitor Cocktail (100×) Thermo Scientific 1862209 Methanol ≥99.9%, EMSURE® [CH3OH] MW: 32,04 g/mol, CAS No.[67-56-1] Merck 1.06009.2511 Neurobasal ThermoFisher 21103049 Normal Goat Serum Thermo ScientificTM 16210064 Novex TM Sharp Pre-stained Protein Standard Invitrogen LC5800 NT3 R&D 267-N3-005 NuPAGETM LDS Sample Buffer (4×) Thermo fisher NP0007 NuPAGETM Sample Reducing Agent (10×) Thermo fisher NP0009 NuPAGETM MOPS SDS Running Buffer (20×) Thermo fisher NP0001 NuPAGETM Transfer Buffer (20×) Thermo fisher NP00061 OptiMEM (1×) Gibco 31985–062 PBS – Phosphate-Buffered Saline Thermo ScientificTM 10010015 PDL-hydrobromide Sigma P6407 Penicillin-Streptomycin (10,000 U/mL) Gibco 15140122 Saponin Sigma 84510 Skimmed Milk Powder Spinnrad 2231018 Triton® X 100 Sigma Aldrich T8787 Trypan Blue Stain (0.4%) InvitrogenTM T10282 Tween 20, 100% Nonionic Detergent Bio-Rad Laboratories 1706531 UltraPureTM DNase/RNase-Free Distilled Water InvitrogenTM 10977–035 Vectashield HardSet Antifade mounting media VectorLab H-1400-10 Critical commercial assays Amicon® Ultra Centrifugation filter 30 kDa MWCO Merck UFC9030 Human IgG ELISA MabTech 3850-1AD-6 HuProt v4.0 Protein array PEPperPRINT N/A Lipofectamine 2000 Thermo Fisher 11668019 NAbTM Protein A/G Spin Kit Thermo Fisher 89980 PierceTM BCA Protein Assay Kits Thermo Fisher 23225 Deposited data Neuronal differentiation and MEA plating using an inducible NGN2 hiPSC-line Technology Platform Pluripotent Stem Cells of the Max Delbrück Center https://doi.org/10.17504/protocols.io. kqdg3q54ev25/v1 Experimental models: Cell lines HeLa cells N/A N/A ioGlutamatergic neurons bit.bio io1001 hiPSC-derived glutamatergic neurons Technology Platform Pluripotent Stem Cells of the Max Delbrück Center hiPSC line BIHi005-A-24 Recombinant DNA mCer-hSYP Prof. Mike Cousin (University of Edinburgh) N/A CD2-EmGFP Lenti ORF clone of Human CD2 molecule, Origene N/A rSYP-YFP Dr. Hisashi Umemori (Harvard Medical School) N/A Software and algorithms Biovoxxel 3D Box (v1.23.0) Jan Brocher N/A ImageJ (v1.54g) FIJI https://github.com/fiji/fiji/ Inkscape (v1.2.1) Inkscape www.inkscape.org (Continued on next page) Cell Reports Medicine 7, 102822, June 16, 2026 e2 Article ll OPEN ACCESS ..

    Produced:

    Article Title: Targeted delivery of glucocerebrosidase to lysosomes: The LYSOTAC (LYSOsome-TArgeting Chimera) technology
    Article Snippet: .. LIMP-2-deficient HEK293 cells were produced using a LIMPII (SCARB2) Human Gene Knockout Kit (CRISPR) (# KN402162 ; Origene, Rockville, MD, USA) according to the manufacturer’s instructions. ..



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    Hyperoxia‐induced senescent fASM secrete higher levels of SASP. Cells cultured till day 7 in normoxic (21% O 2 ) or hyperoxic (50% O 2 ) environment were incubated with fresh growth media in normoxia for 24 h, and the supernatants were collected. Samples were then analyzed for SASP secretion by Eve Technologies Corporation (Calgary, Alberta, Canada) using Luminex xMAP and the Human Cytokine/Chemokine 96‐Plex Discovery Assay Array (HD96) panel. (A) Out of the 96 proteins, 80 were detected and visualized using a heatmap. (B) A detailed analysis of each detected marker is shown as fold‐change normalized to control. For statistical analysis, 2‐way ANOVA with a two‐stage linear step‐up procedure of Benjamini, Krieger and Yekutieli test, with individual variances computed for each comparison was applied. False discovery rate < 0.05 was considered significant. Data are presented as box plot of n = 7 cell lines per group.

    Journal: Aging Cell

    Article Title: Targeting Hyperoxia‐Induced Cellular Senescence in Developing Human Airway Cells: Senomorphics Versus Senolytics Versus Antioxidants

    doi: 10.1111/acel.70538

    Figure Lengend Snippet: Hyperoxia‐induced senescent fASM secrete higher levels of SASP. Cells cultured till day 7 in normoxic (21% O 2 ) or hyperoxic (50% O 2 ) environment were incubated with fresh growth media in normoxia for 24 h, and the supernatants were collected. Samples were then analyzed for SASP secretion by Eve Technologies Corporation (Calgary, Alberta, Canada) using Luminex xMAP and the Human Cytokine/Chemokine 96‐Plex Discovery Assay Array (HD96) panel. (A) Out of the 96 proteins, 80 were detected and visualized using a heatmap. (B) A detailed analysis of each detected marker is shown as fold‐change normalized to control. For statistical analysis, 2‐way ANOVA with a two‐stage linear step‐up procedure of Benjamini, Krieger and Yekutieli test, with individual variances computed for each comparison was applied. False discovery rate < 0.05 was considered significant. Data are presented as box plot of n = 7 cell lines per group.

    Article Snippet: Supernatants collected at day 8 from normoxia and hyperoxia‐exposed fASM were analyzed for SASP secretion by Eve Technologies Corporation (Calgary, Alberta, Canada) using the Human Cytokine/Chemokine 96‐Plex Discovery Assay Array (HD96) panel.

    Techniques: Cell Culture, Incubation, Luminex, Marker, Control, Comparison

    Occludin modulates LPS-induced IL-8 secretion, barrier integrity, and cytoskeletal remodeling in human bronchial epithelial cells. (A) The BEAS-2b cells were transfected and were then incubated with LPS in a time-dependent manner before the generation of total cell lysates, and occludin transcripts were assessed by qRT-PCR. ∗ p < 0.05 compared to the control. (B) The cells were treated with LPS in a time-dependent manner. The occludin-specific antibody was assessed by Western blot analysis. β-actin was used as a loading control. (C) A construct expressing wild-type occludin or siRNA-occludin was transiently transfected into BEAS-2b cells. The cells were washed and serum-starved overnight. They were subsequently treated with LPS for 2 h and a cytokine assay was performed with cultured media and cell lysates were harvested for qRT-PCR of IL-8 (D) . The density of the resulting spots of IL-8 was measured using a densitometric analysis. ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT occludin-treated transfectants. (E) The cells were transfected with either the wild-type occludin construct or siRNA-occuldin before incubation with LPS for various times, and then TEER testing was performed. Error bars represent the SEM of at least three independent experiments. (F) Cells were then treated with LPS for 2 h. F-actin staining was performed using ActinRed 555 ReadyProbe reagent (Molecular Probes) following the manufacturer's instructions. Cell nuclei were stained with diluted Deep Red (1:300). The fluorescence intensity was analyzed and statistically evaluated (right panel). ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT occludin-treated transfectants. All data are representative of at least three independent experiments.

    Journal: Redox Biology

    Article Title: Prophylactic C-terminal occludin–derived peptide attenuates LPS-induced airway inflammation via barrier preservation and mitochondrial ROS regulation

    doi: 10.1016/j.redox.2026.104119

    Figure Lengend Snippet: Occludin modulates LPS-induced IL-8 secretion, barrier integrity, and cytoskeletal remodeling in human bronchial epithelial cells. (A) The BEAS-2b cells were transfected and were then incubated with LPS in a time-dependent manner before the generation of total cell lysates, and occludin transcripts were assessed by qRT-PCR. ∗ p < 0.05 compared to the control. (B) The cells were treated with LPS in a time-dependent manner. The occludin-specific antibody was assessed by Western blot analysis. β-actin was used as a loading control. (C) A construct expressing wild-type occludin or siRNA-occludin was transiently transfected into BEAS-2b cells. The cells were washed and serum-starved overnight. They were subsequently treated with LPS for 2 h and a cytokine assay was performed with cultured media and cell lysates were harvested for qRT-PCR of IL-8 (D) . The density of the resulting spots of IL-8 was measured using a densitometric analysis. ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT occludin-treated transfectants. (E) The cells were transfected with either the wild-type occludin construct or siRNA-occuldin before incubation with LPS for various times, and then TEER testing was performed. Error bars represent the SEM of at least three independent experiments. (F) Cells were then treated with LPS for 2 h. F-actin staining was performed using ActinRed 555 ReadyProbe reagent (Molecular Probes) following the manufacturer's instructions. Cell nuclei were stained with diluted Deep Red (1:300). The fluorescence intensity was analyzed and statistically evaluated (right panel). ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT occludin-treated transfectants. All data are representative of at least three independent experiments.

    Article Snippet: Proteome Profiler Human Cytokine Array kit was purchased from R&D Systems (cat no. ARY005B, USA).

    Techniques: Transfection, Incubation, Quantitative RT-PCR, Control, Western Blot, Construct, Expressing, Cytokine Assay, Cell Culture, Staining, Fluorescence

    The peptide regulates mitochondrial dysfunction and ROS production by inhibiting LPS-induced p38 activation. (A) The BEAS-2b cells were treated with wild-type occludin peptide (pepWT OCLN) or mutant occludin peptide (pepMut OCLN) and incubated with LPS for 15, 30 min. The phospho-specific and total antibodies were assessed by Western blot analysis. β-actin was used as a loading control. (B) The BEAS-2b cells were transfected with p38 overexpression construct (WT p38) or siRNA-p38 for 24 h and incubated with LPS for 4 h siRNA-scramble was used as a negative control. The proinflammatory cytokine transcripts were assessed by qRT-PCR. ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT p38-transfected cells. (C) The mitochondrial membrane potential of LPS-induced BEAS-2b cells treated with either WT OCLN peptide or mut peptide was stained with JC-1 dye. Images are representative results of 3 independent experiments. (D) The mitochondria fission was stained using phospho-Drp1 antibody and visualized. The fluorescence intensity was analyzed and statistically evaluated (right panel). ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT OCLN peptide-treated transfectants. (E) After the BEAS-2b cells were harvested, cell lysates were used for MTT assay. (F) After mitochondria from the cells was isolated, the mitochondria lysates were used for mtROS measurement. ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS only; ∗∗∗ p < 0.05 compared with LPS- and WT occludin peptide-treated cells. All data shown are representative of three independent experiments.

    Journal: Redox Biology

    Article Title: Prophylactic C-terminal occludin–derived peptide attenuates LPS-induced airway inflammation via barrier preservation and mitochondrial ROS regulation

    doi: 10.1016/j.redox.2026.104119

    Figure Lengend Snippet: The peptide regulates mitochondrial dysfunction and ROS production by inhibiting LPS-induced p38 activation. (A) The BEAS-2b cells were treated with wild-type occludin peptide (pepWT OCLN) or mutant occludin peptide (pepMut OCLN) and incubated with LPS for 15, 30 min. The phospho-specific and total antibodies were assessed by Western blot analysis. β-actin was used as a loading control. (B) The BEAS-2b cells were transfected with p38 overexpression construct (WT p38) or siRNA-p38 for 24 h and incubated with LPS for 4 h siRNA-scramble was used as a negative control. The proinflammatory cytokine transcripts were assessed by qRT-PCR. ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT p38-transfected cells. (C) The mitochondrial membrane potential of LPS-induced BEAS-2b cells treated with either WT OCLN peptide or mut peptide was stained with JC-1 dye. Images are representative results of 3 independent experiments. (D) The mitochondria fission was stained using phospho-Drp1 antibody and visualized. The fluorescence intensity was analyzed and statistically evaluated (right panel). ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS treatment; ∗∗∗ p < 0.05 compared with WT OCLN peptide-treated transfectants. (E) After the BEAS-2b cells were harvested, cell lysates were used for MTT assay. (F) After mitochondria from the cells was isolated, the mitochondria lysates were used for mtROS measurement. ∗ p < 0.05 compared with control; ∗∗ p < 0.05 compared with LPS only; ∗∗∗ p < 0.05 compared with LPS- and WT occludin peptide-treated cells. All data shown are representative of three independent experiments.

    Article Snippet: Proteome Profiler Human Cytokine Array kit was purchased from R&D Systems (cat no. ARY005B, USA).

    Techniques: Activation Assay, Mutagenesis, Incubation, Western Blot, Control, Transfection, Over Expression, Construct, Negative Control, Quantitative RT-PCR, Membrane, Staining, Fluorescence, MTT Assay, Isolation