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gsea java desktop program  (Broad Institute Inc)

 
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    Broad Institute Inc gsea java desktop program
    Gsea Java Desktop Program, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gsea+java+desktop+program/gsea+software/pmc09894672__41467_2023_36109_MOESM2_ESM-9-1-9
    Average 90 stars, based on 1 article reviews
    gsea java desktop program - by Bioz Stars, 2026-09
    90/100 stars

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    Software:

    Article Title:
    Article Snippet: Microsoft Excel for Mac, Version 16.54 QIAGEN Ingenuity Pathway Analysis (QIAGEN IPA), version 01-20-04 Palantir Foundry platform (Palantir Technologies), version 5.341.0 For Whole blood transcriptome - Trimmomatic (version 0.36) - STAR aligner (version 2.5.3a) - HTSeq (version 0.9.1) - R package edgeR (version 3.30.3) - R package LIMMA (version 3.44.3) - Molecular Signatures Database gene sets (version 6.1). .. The GSEA Java desktop program was downloaded from the Broad Institute (http:// www.broadinstitute.org/gsea/index.jsp) For microRNA - bcl2fastq software (version 0.10.1; Illumina, Inc.). ..

    other:

    Article Title: HIV vaccine candidate efficacy in female macaques mediated by cAMP-dependent efferocytosis and V2-specific ADCC
    Article Snippet: The GSEA Java desktop program was downloaded from the Broad Institute ( http://www.broadinstitute.org/gsea/index.jsp ) and used with GSEA Pre-Ranked module parameters (number of permutations: 1000; enrichment statistic: weighted; seed for permutation: 111, 15 ≤ gene set size ≤ 2000).



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    gsea java desktop program  (Broad Institute Inc)
    90
    Broad Institute Inc gsea java desktop program
    Gsea Java Desktop Program, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gsea+java+desktop+program/gsea+software/pmc09894672__41467_2023_36109_MOESM2_ESM-9-1-9
    Average 90 stars, based on 1 article reviews
    gsea java desktop program - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    gsea java desktop program gsea v. 4.1.0 for windows  (Broad Institute Inc)
    90
    Broad Institute Inc gsea java desktop program gsea v. 4.1.0 for windows
    Unbiased transcriptomic analysis shows that pancreatic SCG5 expression is associated with the adipopenia phenotype. (A) Bubble plot summarizing the results of gene set enrichment analysis <t>(GSEA)</t> dissecting adipose transcriptomic profiles from donors of pancreatic SCG5 -high or -low groups. (B) Representative enrichment plots of cachexia and adipopenia-related gene sets. (C–F) Gene networks comparing correlations among top genes of each indicated gene set, human phenotype ontology (HP) Lipodystrophy (C) , HP Cachexia (D) , Gene Ontology biological process (GOBP) Mitochondrial respiratory chain complex assembly (E) , and GOBP Brown fat cell differentiation (F) .
    Gsea Java Desktop Program Gsea V. 4.1.0 For Windows, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gsea+java+desktop+program/gsea+software/pmc09428794-75-1-16
    Average 90 stars, based on 1 article reviews
    gsea java desktop program gsea v. 4.1.0 for windows - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

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    Unbiased transcriptomic analysis shows that pancreatic SCG5 expression is associated with the adipopenia phenotype. (A) Bubble plot summarizing the results of gene set enrichment analysis (GSEA) dissecting adipose transcriptomic profiles from donors of pancreatic SCG5 -high or -low groups. (B) Representative enrichment plots of cachexia and adipopenia-related gene sets. (C–F) Gene networks comparing correlations among top genes of each indicated gene set, human phenotype ontology (HP) Lipodystrophy (C) , HP Cachexia (D) , Gene Ontology biological process (GOBP) Mitochondrial respiratory chain complex assembly (E) , and GOBP Brown fat cell differentiation (F) .

    Journal: Frontiers in Oncology

    Article Title: Machine learning-featured Secretogranin V is a circulating diagnostic biomarker for pancreatic adenocarcinomas associated with adipopenia

    doi: 10.3389/fonc.2022.942774

    Figure Lengend Snippet: Unbiased transcriptomic analysis shows that pancreatic SCG5 expression is associated with the adipopenia phenotype. (A) Bubble plot summarizing the results of gene set enrichment analysis (GSEA) dissecting adipose transcriptomic profiles from donors of pancreatic SCG5 -high or -low groups. (B) Representative enrichment plots of cachexia and adipopenia-related gene sets. (C–F) Gene networks comparing correlations among top genes of each indicated gene set, human phenotype ontology (HP) Lipodystrophy (C) , HP Cachexia (D) , Gene Ontology biological process (GOBP) Mitochondrial respiratory chain complex assembly (E) , and GOBP Brown fat cell differentiation (F) .

    Article Snippet: The GSEA Java desktop program (GSEA v. 4.1.0 for Windows) was downloaded from the website of Broad Institute ( https://www.gsea-msigdb.org ).

    Techniques: Expressing, Cell Differentiation