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Biotechnology Information genomic sequence databases
Genomic Sequence Databases, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genomic+sequence+databases/centre+national/pm42083299-58-11-21
Average 86 stars, based on 1 article reviews
genomic sequence databases - by Bioz Stars, 2026-09
86/100 stars

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Sequencing:

Article Title: Autoregulation of the Human Liver X Receptor α Promoter
Article Snippet: .. The genomic sequence and organization of the hLXR gene were determined by searching the human genome and the high throughput genomic sequence databases (National Center for Biotechnology Information) using the revised mRNA sequence for hLXR . ..

Article Title: Application of Metagenomic Next‐Generation Sequencing in the Diagnosis of Pneumonia in Patients With Cancer
Article Snippet: .. Subsequently, the non‐human sequences were classified by simultaneous alignment to the genomic sequence databases downloaded from the US National Center for Biotechnology Information (NCBI) and Pathosystems Resource Integration Center (PATRIC) databases, which contained data of 13,992 bacterial species, 1659 fungal species, 13,000 virus species, and 287 parasite pathogens. ..

Article Title: Diagnostic Value of Metagenomic Next-Generation Sequencing for Pneumonia in Immunocompromised Patients
Article Snippet: The remaining sequencing data were depleted of human host sequences by mapping to the human reference genome grch38 using Bowtie2 software ( https://bowtie-bio.sourceforge.net/ ). .. Then, the nonhuman sequences contained 13992 bacterial, 1659 fungal, 13000 viral, and 287 parasitic pathogens, which were classified by simultaneously aligning genomic sequence databases downloaded from the National Center for Biotechnology Information ( https://ftp.ncbi.nlm.nih.gov/genomes/ ) and Pathosystems Resource Integration Center (PATRIC) databases (Bacterial and Viral Bioinformatics Resource Center | BV-BRC). ..

Article Title: Elevated Rate of Fixation of Endogenous Retroviral Elements in Haplorhini TRIM5 and TRIM22 Genomic Sequences: Impact on Transcriptional Regulation
Article Snippet: .. Genes of the TRIM5/6/22/34 cluster from human, chimpanzee, and rhesus macaque were retrieved from the respective genomic sequence databases at the National Center for Biotechnology Information (NCBI). ..

Article Title: Application of Metagenomic Next-Generation Sequencing in the Diagnosis of Pneumonia in Patients With Cancer.
Article Snippet: .. Subsequently, the nonhuman sequences were classified by simultaneous alignment to the genomic sequence databases downloaded from the US National Center for Biotechnology Information (NCBI) and Pathosystems Resource Integration Center (PATRIC) databases, which contained data of 13,992 bacterial species, 1659 fungal species, 13,000 virus species, and 287 parasite pathogens. ..

High Throughput Screening Assay:

Article Title: Autoregulation of the Human Liver X Receptor α Promoter
Article Snippet: .. The genomic sequence and organization of the hLXR gene were determined by searching the human genome and the high throughput genomic sequence databases (National Center for Biotechnology Information) using the revised mRNA sequence for hLXR . ..

Virus:

Article Title: Application of Metagenomic Next‐Generation Sequencing in the Diagnosis of Pneumonia in Patients With Cancer
Article Snippet: .. Subsequently, the non‐human sequences were classified by simultaneous alignment to the genomic sequence databases downloaded from the US National Center for Biotechnology Information (NCBI) and Pathosystems Resource Integration Center (PATRIC) databases, which contained data of 13,992 bacterial species, 1659 fungal species, 13,000 virus species, and 287 parasite pathogens. ..

Article Title: Application of Metagenomic Next-Generation Sequencing in the Diagnosis of Pneumonia in Patients With Cancer.
Article Snippet: .. Subsequently, the nonhuman sequences were classified by simultaneous alignment to the genomic sequence databases downloaded from the US National Center for Biotechnology Information (NCBI) and Pathosystems Resource Integration Center (PATRIC) databases, which contained data of 13,992 bacterial species, 1659 fungal species, 13,000 virus species, and 287 parasite pathogens. ..



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Maximum likelihood tree of <t>Yersinia</t> based on an alignment of concatenated allele sequences from 500 core genes. Bootstrap values for species-level clades are shown. The scale bar shows nucleotide substitutions per site.
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Image Search Results


Maximum likelihood tree of Yersinia based on an alignment of concatenated allele sequences from 500 core genes. Bootstrap values for species-level clades are shown. The scale bar shows nucleotide substitutions per site.

Journal: International Journal of Systematic and Evolutionary Microbiology

Article Title: Yersinia fenwicki sp. nov., isolated from human clinical cases in Aotearoa | New Zealand and Australia

doi: 10.1099/ijsem.0.007034

Figure Lengend Snippet: Maximum likelihood tree of Yersinia based on an alignment of concatenated allele sequences from 500 core genes. Bootstrap values for species-level clades are shown. The scale bar shows nucleotide substitutions per site.

Article Snippet: Assemblies for the published isolates were downloaded from either the Bacterial Isolate Genome Sequence Database (BIGSdb) Yersinia database hosted by the Pasteur Institute [ ] or EnteroBase [ ].

Techniques: