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TATAA Biocenter AB genex v6 software
Genex V6 Software, supplied by TATAA Biocenter AB, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genex+software/genex+software/pmc10861829-70-12-15
Average 90 stars, based on 1 article reviews
genex v6 software - by Bioz Stars, 2026-11
90/100 stars

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Article Title: Overexpression of microRNA-29b induces apoptosis of multiple myeloma cells through down regulating Mcl-1.
Article Snippet: 0006-291X/$ see front matter 2011 Elsevier Inc. A doi:10.1016/j.bbrc.2011.09.063 ⇑ Corresponding authors.. Address: Department o Beijing Institute of Radiation Medicine, 27 Taiping Ro Fax: +86 10 68158312 (L.-S. Wang), +86 29 88775199 E-mail addresses: xiequnchen@fmmu.edu.cn (X.(L.-S.. Wang).

Article Title: The placental immune milieu is characterized by a Th2- and anti-inflammatory transcription profile, regardless of maternal allergy, and associates with neonatal immunity.
Article Snippet: .. YHWAZ was detected as the most stable HKG by Normfinder30 in GenEx software (MultiD Analyses/ TATAA Biocenter, Gothenburg, Sweden) and was therefore used for normalization of the raw Ct values according to the comparative Ct method. ..

Article Title: Inhibition of SOX17 by microRNA 141 and methylation activates the WNT signaling pathway in esophageal cancer.
Article Snippet: Quantitative PCR was performed as described in the method of Quantitect SYBR Green PCR Kit (Qiagen, Hilden, Germany) with Mx3000p (Stratagene, La Jolla, CA). .. GenEX software, version 4.10 (TATAA Biocenter, Munich, Germany) was used to analyze real-time PCR results. ..

Article Title: MicroRNA-193b regulates proliferation, migration and invasion in human hepatocellular carcinoma cells.
Article Snippet: Background and Aims: Recently, some miRNAs have been reported to be connected closely with the development of human hepatocellular carcinoma.. However, the functions of these miRNAs in HCC remain largely undefined.. Methods: The expression profiles of miR-193b were compared between HCC tissues and adjacent normal liver tissues using qRT-PCR method.

Article Title: Myocardial iron homeostasis and hepcidin expression in a rat model of heart failure at different levels of dietary iron intake.
Article Snippet: Primers for reference genes were purchased from Generi Biotech. .. The melting curves were monitored using GenEx software (TATAA Biocenter). ..

Article Title: Oral Health May Affect the Performance of mRNA-Based Saliva Biomarkers for Oral Squamous Cell Cancer.
Article Snippet: Oral squamous cell carcinoma (OSCC) has a dismal 50% five-year survival rate, emphasizing the need to develop reliable and sensitive tools for early diagnosis.. In this study we evaluated the performance of 7 previously identified, potential mRNA biomarkers of OSCC in saliva samples of Hungarian patients.. Expression of the putative OSCC biomarkers (DUSP1, OAZ1, H3F3A, IL1B, IL8, SAT and S100P), 2 biomarkers of inflammation (IL6 and TNFα) and 8 putative normalizing genes was quantified from each sample using real-time quantitative PCR.

Article Title: Myocardial iron homeostasis and hepcidin expression in a rat model of heart failure at different levels of dietary iron intake.
Article Snippet: Thermal protocol was set as follows: 50 °C for 5 s, 98 °C for 3min, then 40 cycles of 98 °C for 5 s, and 60 °C for 5 s. For the data collection was utilized the BioMark 4.2.2 and BioMark Real-Time PCR Analysis Software 4.1.3. (Fluidigm). .. All samples were measured in duplicates and evaluated by GenEx software (TATAA Biocenter). .. Pulverized samples were individually lysed in lysis buffer (RIPA buffer, Sigma-Aldrich).

Real-time Polymerase Chain Reaction:

Article Title: Overexpression of microRNA-29b induces apoptosis of multiple myeloma cells through down regulating Mcl-1.
Article Snippet: 0006-291X/$ see front matter 2011 Elsevier Inc. A doi:10.1016/j.bbrc.2011.09.063 ⇑ Corresponding authors.. Address: Department o Beijing Institute of Radiation Medicine, 27 Taiping Ro Fax: +86 10 68158312 (L.-S. Wang), +86 29 88775199 E-mail addresses: xiequnchen@fmmu.edu.cn (X.(L.-S.. Wang).

Article Title: Inhibition of SOX17 by microRNA 141 and methylation activates the WNT signaling pathway in esophageal cancer.
Article Snippet: Quantitative PCR was performed as described in the method of Quantitect SYBR Green PCR Kit (Qiagen, Hilden, Germany) with Mx3000p (Stratagene, La Jolla, CA). .. GenEX software, version 4.10 (TATAA Biocenter, Munich, Germany) was used to analyze real-time PCR results. ..

Article Title: MicroRNA-193b regulates proliferation, migration and invasion in human hepatocellular carcinoma cells.
Article Snippet: Background and Aims: Recently, some miRNAs have been reported to be connected closely with the development of human hepatocellular carcinoma.. However, the functions of these miRNAs in HCC remain largely undefined.. Methods: The expression profiles of miR-193b were compared between HCC tissues and adjacent normal liver tissues using qRT-PCR method.

other:

Article Title: Contribution of a Non-β-Cell Source to β-Cell Mass during Pregnancy
Article Snippet: qPCR reactions were carried out in triplicate with QuantiFast SYBR Green Master Mix (Qiagen) at denaturing temperature of 94°C for 2 minutes, followed by 40 cycles of 94°C for 45 sec, 60°C for 45 sec, 72°C for 45 sec, and followed by 72°C for 2 min. Data were collected using the DNA Engine Opticon2 Continuous Fluorescence Detection System and software (Bio-Rad).



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Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).
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Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).
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Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).
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Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).
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Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).
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Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).

Journal: Journal of Cachexia, Sarcopenia and Muscle

Article Title: Plasma microRNA signature associated with skeletal muscle wasting in post‐menopausal osteoporotic women

doi: 10.1002/jcsm.13421

Figure Lengend Snippet: Fold change and receiver operating characteristic (ROC) curve of plasma microRNAs (miRNAs) of post‐menopausal osteoporotic women with different skeletal muscle mass. Differences of circulating level and ROC curve analysis of up‐regulated miRNAs (A) and down‐regulated miRNAs (B) in osteoporotic women within the first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women within the third tertile (relative‐high ASMMI). Circulating levels of miRNAs are expressed as min to max and compared using a Mann–Whitney t ‐test. The relative area under the curve (AUC) and P ‐value are shown for each ROC curve analysis. The statistics were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software).

Article Snippet: Data analysis was performed using GenEx software Version 6 (Exiqon), considering all post‐analytical variables.

Techniques: MANN-WHITNEY, Software

Adipo‐myokines plasma profile in post‐menopausal osteoporotic women with different skeletal muscle mass. Differences in circulating levels of adipo‐myokines in osteoporotic women of first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women of third tertile (relative‐high ASMMI). All data are expressed as min to max and compared through a parametric unpaired t ‐test. Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software). The differences were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). IL‐8, interleukin‐8; PAI‐1, plasminogen activator inhibitor‐1.

Journal: Journal of Cachexia, Sarcopenia and Muscle

Article Title: Plasma microRNA signature associated with skeletal muscle wasting in post‐menopausal osteoporotic women

doi: 10.1002/jcsm.13421

Figure Lengend Snippet: Adipo‐myokines plasma profile in post‐menopausal osteoporotic women with different skeletal muscle mass. Differences in circulating levels of adipo‐myokines in osteoporotic women of first tertile (relative‐low appendicular skeletal muscle mass index [ASMMI]) compared with osteoporotic women of third tertile (relative‐high ASMMI). All data are expressed as min to max and compared through a parametric unpaired t ‐test. Statistical analysis was performed with Prism® Version 6.01 (GraphPad Software). The differences were considered significant when P < 0.05 (* P < 0.05, ** P < 0.01 and *** P < 0.001). IL‐8, interleukin‐8; PAI‐1, plasminogen activator inhibitor‐1.

Article Snippet: Data analysis was performed using GenEx software Version 6 (Exiqon), considering all post‐analytical variables.

Techniques: Software