earray software (Agilent technologies)
Structured Review

Earray Software, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/earray+software/pmc11312432-14-39-43
Average 90 stars, based on 1 article reviews
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1) Product Images from "A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics"
Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics
Journal: International Journal of Molecular Sciences
doi: 10.3390/ijms25158348
Figure Legend Snippet: Summary of related studies.
Techniques Used: Sequencing, Virus, Generated, ViroCap, Sonication, Mutagenesis, Modification, Software, Hybridization, Sample Prep, Nanopore Sequencing, Ligation
Related Articles
Software:Article Title: Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism Article Snippet: .. Oligonucleotides were loaded on Article Title: Multi-Tissue Microarray Analysis Identifies a Molecular Signature of Regeneration Article Snippet: .. A 60-mer oligonucleotide was designed for each transcript using Article Title: Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei . Article Snippet: .. The transcriptional analysis using the expression microarray technique was designed based on the Hfx. mediterranei genome using Article Title: Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity Article Snippet: .. A custom Agilent 60-mer oligonucleotide microarray was designed from predicted P. capsici (LT1534 v11.0) and Solanum lycopersicum (ITAG 2.3) sequences using Article Title: A Novel Translocation Breakpoint within the BPTF Gene Is Associated with a Pre-Malignant Phenotype Article Snippet: .. The array design is uploaded for manufacturing using Article Title: Genetic variation and expression diversity between grain and sweet sorghum lines Article Snippet: .. Custom 60-mer oligonucleotide probes were designed using the publicly available Article Title: Phytophthora capsici -tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle Article Snippet: To test for genomic DNA contamination, PCR using primers specific for PcTubulin (Table ), was performed on the extracted RNA. cDNA was synthesized using 500 ng of total RNA, using a commercial kit and primer (SuperScriptTM II cDNA synthesis kit and Oligo dT primer; Invitrogen Corp., Carlsbad, CA, USA) following the manufacturer's instructions. .. A custom 60-mer oligonucleotide microarray was designed from predicted transcripts of the P. capsici (LT1534 v11.0 [ ]), and S. lycopersicum (ITAG 2.3, [ ]) genomes using Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics Article Snippet: Li et al. 2020 [ ] , Use of enrichment for cheaper and sensitive sequencing of Coronavirus genomes in bats , n/a , TruSeq stranded mRNA library preparation kit, Enrichment performed using xGen baits and modified NimbleGen workflow , Illumina HiSeq and Sanger sequencing , Custom panel synthesised using xGen lockdown baits , Coronavirus genomes (Bat) , 10–1000-fold increase. .. Depledge et al. 2011 [ ] , Virus characterisation using CBPH (custom panel) followed by Illumina sequencing , n/a , SureSelect target enrichment system , Illumina Genome Analyser IIx , 120-mer RNA probes designed using custom Perl scripts and Expressing:Article Title: Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei . Article Snippet: .. The transcriptional analysis using the expression microarray technique was designed based on the Hfx. mediterranei genome using Microarray:Article Title: Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei . Article Snippet: .. The transcriptional analysis using the expression microarray technique was designed based on the Hfx. mediterranei genome using Article Title: Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity Article Snippet: .. A custom Agilent 60-mer oligonucleotide microarray was designed from predicted P. capsici (LT1534 v11.0) and Solanum lycopersicum (ITAG 2.3) sequences using Article Title: Phytophthora capsici -tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle Article Snippet: To test for genomic DNA contamination, PCR using primers specific for PcTubulin (Table ), was performed on the extracted RNA. cDNA was synthesized using 500 ng of total RNA, using a commercial kit and primer (SuperScriptTM II cDNA synthesis kit and Oligo dT primer; Invitrogen Corp., Carlsbad, CA, USA) following the manufacturer's instructions. .. A custom 60-mer oligonucleotide microarray was designed from predicted transcripts of the P. capsici (LT1534 v11.0 [ ]), and S. lycopersicum (ITAG 2.3, [ ]) genomes using Virus:Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics Article Snippet: Li et al. 2020 [ ] , Use of enrichment for cheaper and sensitive sequencing of Coronavirus genomes in bats , n/a , TruSeq stranded mRNA library preparation kit, Enrichment performed using xGen baits and modified NimbleGen workflow , Illumina HiSeq and Sanger sequencing , Custom panel synthesised using xGen lockdown baits , Coronavirus genomes (Bat) , 10–1000-fold increase. .. Depledge et al. 2011 [ ] , Virus characterisation using CBPH (custom panel) followed by Illumina sequencing , n/a , SureSelect target enrichment system , Illumina Genome Analyser IIx , 120-mer RNA probes designed using custom Perl scripts and |