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earray software  (Agilent technologies)


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  • 90

    Structured Review

    Agilent technologies earray software
    Summary of related studies.
    Earray Software, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/earray+software/pmc11312432-14-39-43
    Average 90 stars, based on 1 article reviews
    earray software - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics"

    Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics

    Journal: International Journal of Molecular Sciences

    doi: 10.3390/ijms25158348

    Summary of related studies.
    Figure Legend Snippet: Summary of related studies.

    Techniques Used: Sequencing, Virus, Generated, ViroCap, Sonication, Mutagenesis, Modification, Software, Hybridization, Sample Prep, Nanopore Sequencing, Ligation

    Related Articles

    Software:

    Article Title: Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism
    Article Snippet: .. Oligonucleotides were loaded on Agilent eArray software and 2 × 400 k microarrays were obtained from Agilent. ..

    Article Title: Multi-Tissue Microarray Analysis Identifies a Molecular Signature of Regeneration
    Article Snippet: .. A 60-mer oligonucleotide was designed for each transcript using Agilent eArray software and each gene template was represented 23 times on a grid containing 44,450 oligonucleotides. .. As part of the 44,450 oligonucleotides, 1,417 Agilent control probes (positive, negative, and ratiometric) were also included to assess the quality of the hybridization.

    Article Title: Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei .
    Article Snippet: .. The transcriptional analysis using the expression microarray technique was designed based on the Hfx. mediterranei genome using eArray software (v. 6.1, Agilent Technologies, CA, USA) [57]. .. The microarray analysis was conducted at Bioarray, S.L.

    Article Title: Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity
    Article Snippet: .. A custom Agilent 60-mer oligonucleotide microarray was designed from predicted P. capsici (LT1534 v11.0) and Solanum lycopersicum (ITAG 2.3) sequences using eArray software ( https://earray.chem.agilent.com/earray/ ). ..

    Article Title: A Novel Translocation Breakpoint within the BPTF Gene Is Associated with a Pre-Malignant Phenotype
    Article Snippet: .. The array design is uploaded for manufacturing using Agilent's eArray software. .. Competing Interests: Two of the authors of this manuscript (Dr. Yakhini and Mr. Navon) are employed by Agilent Technologies.

    Article Title: Genetic variation and expression diversity between grain and sweet sorghum lines
    Article Snippet: .. Custom 60-mer oligonucleotide probes were designed using the publicly available eArray software (Agilent Technologies). ..

    Article Title: Phytophthora capsici -tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle
    Article Snippet: To test for genomic DNA contamination, PCR using primers specific for PcTubulin (Table ), was performed on the extracted RNA. cDNA was synthesized using 500 ng of total RNA, using a commercial kit and primer (SuperScriptTM II cDNA synthesis kit and Oligo dT primer; Invitrogen Corp., Carlsbad, CA, USA) following the manufacturer's instructions. .. A custom 60-mer oligonucleotide microarray was designed from predicted transcripts of the P. capsici (LT1534 v11.0 [ ]), and S. lycopersicum (ITAG 2.3, [ ]) genomes using eArray software (Agilent Technologies, Inc., Santa Clara, CA, USA). ..

    Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics
    Article Snippet: Li et al. 2020 [ ] , Use of enrichment for cheaper and sensitive sequencing of Coronavirus genomes in bats , n/a , TruSeq stranded mRNA library preparation kit, Enrichment performed using xGen baits and modified NimbleGen workflow , Illumina HiSeq and Sanger sequencing , Custom panel synthesised using xGen lockdown baits , Coronavirus genomes (Bat) , 10–1000-fold increase. .. Depledge et al. 2011 [ ] , Virus characterisation using CBPH (custom panel) followed by Illumina sequencing , n/a , SureSelect target enrichment system , Illumina Genome Analyser IIx , 120-mer RNA probes designed using custom Perl scripts and Agilent eArray software ( https://earray.chem.agilent.com/earray/ , accessed on 27 April 2023). Synthesised by Agilent , Herpesvirus , exceeded 100-fold read depth. .. Pecman et al. 2017 [ ] , rRNA enrichment to assess subtractive hybridisation for Illumina sequencing of plant viruses , n/a , TailorMix miRNA Sample preparation kit v2 and Illumina HiSeq. Qiagen RNeasy Mini Kit and ScriptSeq complete kit (plant leaf) followed by MiSeq , Illumina HiSeq (2500), MiSeq , n/a , ssRNA virus and dsDNA virus , n/a.

    Expressing:

    Article Title: Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei .
    Article Snippet: .. The transcriptional analysis using the expression microarray technique was designed based on the Hfx. mediterranei genome using eArray software (v. 6.1, Agilent Technologies, CA, USA) [57]. .. The microarray analysis was conducted at Bioarray, S.L.

    Microarray:

    Article Title: Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei .
    Article Snippet: .. The transcriptional analysis using the expression microarray technique was designed based on the Hfx. mediterranei genome using eArray software (v. 6.1, Agilent Technologies, CA, USA) [57]. .. The microarray analysis was conducted at Bioarray, S.L.

    Article Title: Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity
    Article Snippet: .. A custom Agilent 60-mer oligonucleotide microarray was designed from predicted P. capsici (LT1534 v11.0) and Solanum lycopersicum (ITAG 2.3) sequences using eArray software ( https://earray.chem.agilent.com/earray/ ). ..

    Article Title: Phytophthora capsici -tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle
    Article Snippet: To test for genomic DNA contamination, PCR using primers specific for PcTubulin (Table ), was performed on the extracted RNA. cDNA was synthesized using 500 ng of total RNA, using a commercial kit and primer (SuperScriptTM II cDNA synthesis kit and Oligo dT primer; Invitrogen Corp., Carlsbad, CA, USA) following the manufacturer's instructions. .. A custom 60-mer oligonucleotide microarray was designed from predicted transcripts of the P. capsici (LT1534 v11.0 [ ]), and S. lycopersicum (ITAG 2.3, [ ]) genomes using eArray software (Agilent Technologies, Inc., Santa Clara, CA, USA). ..

    Virus:

    Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics
    Article Snippet: Li et al. 2020 [ ] , Use of enrichment for cheaper and sensitive sequencing of Coronavirus genomes in bats , n/a , TruSeq stranded mRNA library preparation kit, Enrichment performed using xGen baits and modified NimbleGen workflow , Illumina HiSeq and Sanger sequencing , Custom panel synthesised using xGen lockdown baits , Coronavirus genomes (Bat) , 10–1000-fold increase. .. Depledge et al. 2011 [ ] , Virus characterisation using CBPH (custom panel) followed by Illumina sequencing , n/a , SureSelect target enrichment system , Illumina Genome Analyser IIx , 120-mer RNA probes designed using custom Perl scripts and Agilent eArray software ( https://earray.chem.agilent.com/earray/ , accessed on 27 April 2023). Synthesised by Agilent , Herpesvirus , exceeded 100-fold read depth. .. Pecman et al. 2017 [ ] , rRNA enrichment to assess subtractive hybridisation for Illumina sequencing of plant viruses , n/a , TailorMix miRNA Sample preparation kit v2 and Illumina HiSeq. Qiagen RNeasy Mini Kit and ScriptSeq complete kit (plant leaf) followed by MiSeq , Illumina HiSeq (2500), MiSeq , n/a , ssRNA virus and dsDNA virus , n/a.



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    Image Search Results


    Summary of related studies.

    Journal: International Journal of Molecular Sciences

    Article Title: A Review of Probe-Based Enrichment Methods to Inform Plant Virus Diagnostics

    doi: 10.3390/ijms25158348

    Figure Lengend Snippet: Summary of related studies.

    Article Snippet: Depledge et al. 2011 [ ] , Virus characterisation using CBPH (custom panel) followed by Illumina sequencing , n/a , SureSelect target enrichment system , Illumina Genome Analyser IIx , 120-mer RNA probes designed using custom Perl scripts and Agilent eArray software ( https://earray.chem.agilent.com/earray/ , accessed on 27 April 2023). Synthesised by Agilent , Herpesvirus , exceeded 100-fold read depth.

    Techniques: Sequencing, Virus, Generated, ViroCap, Sonication, Mutagenesis, Modification, Software, Hybridization, Sample Prep, Nanopore Sequencing, Ligation