Review



tiling genomic dna microarrays  (NimbleGen Systems GmbH)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    NimbleGen Systems GmbH tiling genomic dna microarrays
    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input <t>DNA</t> and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA <t>microarrays,</t> and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.
    Tiling Genomic Dna Microarrays, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/tiling+genomic+dna+microarrays/pmc06746451-196-2-6
    Average 90 stars, based on 1 article reviews
    tiling genomic dna microarrays - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF"

    Article Title: The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF

    Journal: The Journal of Biological Chemistry

    doi: 10.1074/jbc.RA118.007348

    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input DNA and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA microarrays, and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.
    Figure Legend Snippet: mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input DNA and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA microarrays, and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.

    Techniques Used: Binding Assay, Isolation, Labeling, Immunoprecipitation, ChIP-chip, ChIP-sequencing, Sequencing

    Related Articles

    Immunoprecipitation:

    Article Title: Core 2 ß1,6-N-acetylglucosaminyltransferase-I, crucial for P-selectin ligand expression is controlled by a distal enhancer regulated by STAT4 and T-bet in CD4+ T helper cells 1.
    Article Snippet: P-selectin ligands (P-ligs) support the recruitment of lymphocytes into inflamed tissues.. Binding to Pselectin is mediated by oligosaccharide groups synthesized by means of several glycosyltransferases including core 2 ß1,6-N-acetylglucosaminyltransferase-I (C2GlcNAcT-I), encoded by the gene Gcnt1.. Using Gcnt1−/− Th1 cells, we show that C2GlcNAcT-I is crucial for inflammatory T cell homing in vivo.

    Amplification:

    Article Title: Core 2 ß1,6-N-acetylglucosaminyltransferase-I, crucial for P-selectin ligand expression is controlled by a distal enhancer regulated by STAT4 and T-bet in CD4+ T helper cells 1.
    Article Snippet: P-selectin ligands (P-ligs) support the recruitment of lymphocytes into inflamed tissues.. Binding to Pselectin is mediated by oligosaccharide groups synthesized by means of several glycosyltransferases including core 2 ß1,6-N-acetylglucosaminyltransferase-I (C2GlcNAcT-I), encoded by the gene Gcnt1.. Using Gcnt1−/− Th1 cells, we show that C2GlcNAcT-I is crucial for inflammatory T cell homing in vivo.

    Whole Genome Amplification:

    Article Title: Core 2 ß1,6-N-acetylglucosaminyltransferase-I, crucial for P-selectin ligand expression is controlled by a distal enhancer regulated by STAT4 and T-bet in CD4+ T helper cells 1.
    Article Snippet: P-selectin ligands (P-ligs) support the recruitment of lymphocytes into inflamed tissues.. Binding to Pselectin is mediated by oligosaccharide groups synthesized by means of several glycosyltransferases including core 2 ß1,6-N-acetylglucosaminyltransferase-I (C2GlcNAcT-I), encoded by the gene Gcnt1.. Using Gcnt1−/− Th1 cells, we show that C2GlcNAcT-I is crucial for inflammatory T cell homing in vivo.

    Microarray:

    Article Title: Core 2 ß1,6-N-acetylglucosaminyltransferase-I, crucial for P-selectin ligand expression is controlled by a distal enhancer regulated by STAT4 and T-bet in CD4+ T helper cells 1.
    Article Snippet: P-selectin ligands (P-ligs) support the recruitment of lymphocytes into inflamed tissues.. Binding to Pselectin is mediated by oligosaccharide groups synthesized by means of several glycosyltransferases including core 2 ß1,6-N-acetylglucosaminyltransferase-I (C2GlcNAcT-I), encoded by the gene Gcnt1.. Using Gcnt1−/− Th1 cells, we show that C2GlcNAcT-I is crucial for inflammatory T cell homing in vivo.



    Similar Products

    dna tiling microarray  (Oxford Gene Technology)
    90
    Oxford Gene Technology dna tiling microarray
    Dna Tiling Microarray, supplied by Oxford Gene Technology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/dna+tilling+microarray/pmc08743547-349-19-22
    Average 90 stars, based on 1 article reviews
    dna tiling microarray - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    tiling genomic dna microarrays  (NimbleGen Systems GmbH)
    90
    NimbleGen Systems GmbH tiling genomic dna microarrays
    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input <t>DNA</t> and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA <t>microarrays,</t> and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.
    Tiling Genomic Dna Microarrays, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/tiling+genomic+dna+microarrays/pmc06746451-196-2-6
    Average 90 stars, based on 1 article reviews
    tiling genomic dna microarrays - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    custom designed tiling genomic dna microarrays  (NimbleGen Systems GmbH)
    90
    NimbleGen Systems GmbH custom designed tiling genomic dna microarrays
    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input <t>DNA</t> and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA <t>microarrays,</t> and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.
    Custom Designed Tiling Genomic Dna Microarrays, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/tiling+genomic+dna+microarrays/10__1074_slash_jbc__ra118__007348-194-30-44
    Average 90 stars, based on 1 article reviews
    custom designed tiling genomic dna microarrays - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    dna tiling microarray  (NimbleGen Systems GmbH)
    90
    NimbleGen Systems GmbH dna tiling microarray
    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input <t>DNA</t> and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA <t>microarrays,</t> and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.
    Dna Tiling Microarray, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/tiling+genomic+dna+microarrays/pm27505708-108-29-33
    Average 90 stars, based on 1 article reviews
    dna tiling microarray - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    a tiling resolution dna microarray with complete coverage of the human genome  (Snijders Scientific)
    90
    Snijders Scientific a tiling resolution dna microarray with complete coverage of the human genome
    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input <t>DNA</t> and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA <t>microarrays,</t> and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.
    A Tiling Resolution Dna Microarray With Complete Coverage Of The Human Genome, supplied by Snijders Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/a+tiling+resolution+dna+microarray+with+complete+coverage+of+the+human+genome/us08916692-1389-45-18
    Average 90 stars, based on 1 article reviews
    a tiling resolution dna microarray with complete coverage of the human genome - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input DNA and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA microarrays, and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.

    Journal: The Journal of Biological Chemistry

    Article Title: The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF

    doi: 10.1074/jbc.RA118.007348

    Figure Lengend Snippet: mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input DNA and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA microarrays, and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.

    Article Snippet: Tiling genomic DNA microarrays were custom-designed (NimbleGen Systems, Inc.) based on the mm9 release of the IgH locus sequence (murine chr12: 114,341,024–117,349,200).

    Techniques: Binding Assay, Isolation, Labeling, Immunoprecipitation, ChIP-chip, ChIP-sequencing, Sequencing