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dna tiling microarray  (Oxford Gene Technology)

 
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    Oxford Gene Technology dna tiling microarray
    Dna Tiling Microarray, supplied by Oxford Gene Technology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+tiling+microarray/dna+tilling+microarray/pmc08743547-349-19-22
    Average 90 stars, based on 1 article reviews
    dna tiling microarray - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Roles of cell division control factor SdiA: recognition of quorum sensing signals and modulation of transcription regulation targets.
    Article Snippet: The mixture of fluorescent-labeled samples was hybridized to a DNA-tilling microarray (Oxford Gene Technology, Oxford, UK) (Shimada et al. 2008, 2011b; Teramoto et al. 2010).

    Article Title: Roles of cell division control factor SdiA: recognition of quorum sensing signals and modulation of transcription regulation targets.
    Article Snippet: The fluorescent-labeled DNA mixtures were hybridized to a DNA-tilling array consisting of 43,450 species of 60-bp-long DNA probe, which are designed to cover the entire E. coli genome at 105- bp interval (Oxford Gene Technology, Oxford, UK) (Shimada et al. 2008, 2011a; Teramoto et al. 2010).

    Microarray:

    Article Title: Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol.
    Article Snippet: .. The mixture of fluorescently labelled samples was hybridized to a DNA tiling microarray (Oxford Gene Technology) (Teramoto et al., 2010; Shimada et al., 2011a, b). ..

    Article Title: Expanded roles of leucine-responsive regulatory protein in transcription regulation of the Escherichia coli genome: Genomic SELEX screening of the regulation targets
    Article Snippet: .. The mixtures were then hybridized with the DNA tilling microarray (Oxford Gene Technology) and the fluorescence intensities bound on each probe were measured. ..

    Article Title: Correction: The Whole Set of Constitutive Promoters Recognized by RNA Polymerase RpoD Holoenzyme of Escherichia coli
    Article Snippet: .. After two-cycles of SELEX screening, the final products of RpoD holoenzyme-bound DNA fragments were subjected to mapping on the genome using a DNA tilling microarray (Oxford Gene Technology, Oxford, UK) [30–32]. ..

    Article Title: Cooperative regulation of the common target genes between H₂O₂-sensing YedVW and Cu²⁺-sensing CusSR in Escherichia coli.
    Article Snippet: .. The mixtures were 249 hybridized with the DNA tiling microarray (Oxford Gene Technology) and the 250 fluorescence intensities bound on each probe were measured. ..

    Article Title: The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase
    Article Snippet: .. After repeated SELEX screening, the final products of holoenzyme-bound DNA fragments were subjected to mapping on the genome using a DNA tilling microarray (Oxford Gene Technology, Oxford, UK) [ ]. ..

    Article Title: Whole set of constitutive promoters for RpoN sigma factor and the regulatory role of its enhancer protein NtrC in Escherichia coli K-12
    Article Snippet: .. After repeated gSELEX screening, the final products of RpoN holoenzyme-bound DNA fragments were mapped onto the genome using a DNA tiling microarray (Oxford Gene Technology) [ ]. ..

    Fluorescence:

    Article Title: Expanded roles of leucine-responsive regulatory protein in transcription regulation of the Escherichia coli genome: Genomic SELEX screening of the regulation targets
    Article Snippet: .. The mixtures were then hybridized with the DNA tilling microarray (Oxford Gene Technology) and the fluorescence intensities bound on each probe were measured. ..

    Article Title: Cooperative regulation of the common target genes between H₂O₂-sensing YedVW and Cu²⁺-sensing CusSR in Escherichia coli.
    Article Snippet: .. The mixtures were 249 hybridized with the DNA tiling microarray (Oxford Gene Technology) and the 250 fluorescence intensities bound on each probe were measured. ..



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    mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input DNA and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA microarrays, and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.

    Journal: The Journal of Biological Chemistry

    Article Title: The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF

    doi: 10.1074/jbc.RA118.007348

    Figure Lengend Snippet: mV H –CTCF consensus motif is a major determinant of CTCF binding at the murine IgH locus. ChIP with an α-CTCF antibody was performed on CD19 + pro-B cells that were isolated from 8- to 9-week-old RAG2 −/− mice and expanded for 3 days in the presence of IL-7 (10 ng/ml). Cy3-labeled input DNA and Cy5-labeled immunoprecipitated DNA were hybridized to customized tiling DNA microarrays, and peaks were called by the Ringo method . a , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites in the V H domain of the murine IgH locus ( cyan ) and observed CTCF peaks ( yellow ). b , area-proportional Venn diagram showing the overlap between predicted CTCF-binding sites ( cyan ); CTCF peaks were observed by ChIP-chip ( yellow ), and CTCF peaks were observed previously by ChIP-seq . c , enoLOGOS representation of three distinct sequence motifs identified by MEME analysis of the 79 CTCF peaks observed by ChIP-chip that did not contain an mV H –CTCF consensus motif.

    Article Snippet: Tiling genomic DNA microarrays were custom-designed (NimbleGen Systems, Inc.) based on the mm9 release of the IgH locus sequence (murine chr12: 114,341,024–117,349,200).

    Techniques: Binding Assay, Isolation, Labeling, Immunoprecipitation, ChIP-chip, ChIP-sequencing, Sequencing