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Accelrys delphi program
Delphi Program, supplied by Accelrys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/delphi/delphi+program/us12461109-1100-50-18
Average 86 stars, based on 1 article reviews
delphi program - by Bioz Stars, 2026-09
86/100 stars

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Article Title: Theoretical Characterization of Substrate Access/Exit Channels in the Human Cytochrome P450 3A4 Enzyme: Involvement of Phenylalanine Residues in the Gating Mechanism
Article Snippet: Missing residues of 1TQN were modeled with InsightII ( http://www.accelrys.com/products/ ). p K a values were calculated using the MCCE( ) software with DelPhi( ) as a Poisson−Boltzmann solver with a dielectric constant of 4.

Article Title: Mitochondrial tyrosine phosphoproteome: new insights from an up-to-date analysis.
Article Snippet: Tyrosine phosphorylation is a newcomer in the mitochondrial signaling and is currently emerging as an important mechanism for regulating mitochondrial processes.. But to what extent?. By analyzing an updated draft of the mitochondrial tyrosine phosphoproteome, the following observations can be drawn: more than a hundred mitochondrial proteins undergo tyrosine phosphorylation, phosphotyrosine proteins are distributed in each of the submitochondrial compartments, and mitochondrial tyrosine phosphorylated proteins are involved in a variety of functions as metabolism (electron transport chain, Krebs cycle, fatty acid and amino acid metabolism), solute and protein transport, mitochondrial translation machinery, quality protein assessment, oxidative stress, apoptosis, fission, and other.

Article Title: Fluorine substitutions in an antigenic peptide selectively modulate T cell receptor binding in a minimally perturbing manner
Article Snippet: Electrostatic potentials for were calculated with DelPhi as incorporated into Accelrys Discovery Studio using default parameters.

Article Title: Anthrax toxin-induced rupture of artificial lipid bilayer membranes
Article Snippet: Electrostatic potential surfaces were calculated and visualized using Delphi and InsightII (Accelrys, San Diego, CA).

Article Title: Fluorine substitutions in an antigenic peptide selectively modulate T-cell receptor binding in a minimally perturbing manner
Article Snippet: Electrostatic potentials for Figure 1 were calculated with DelPhi, as incorporated into Accelrys Discovery Studio, using default parameters.

Article Title: Molecular recognition and supramolecular self-assembly of a genetically engineered gold binding peptide on Au{111}.
Article Snippet: T he biological interactions responsible for structuring and sustaining life occur between molecular entities via mechanisms of molecular recognition.. Elegant architectures often found in hard biomineralized tissues, for example, are a result of molecular recognition resulting in the formation of hierarchical functional inorganic structures mediated by proteins and other biomolecules.. Similarly, development of advanced implants and therapeutic devices depends on the biocompatibility of solid surfaces, again at the biomolecule/material interfaces.

Solvent:

Article Title: Differential biochemical properties of three canonical Dps proteins from the cyanobacterium Nostoc punctiforme suggest distinct cellular functions
Article Snippet: .. The electrostatic potentials of these protein models, as well as for EcDps were calculated using DelPhi (55), as implemented in Discovery Studio 2.1 (Accelrys), to solve the PoissonBoltzmann equation on the protein system in a cubic lattice (implicit solvent model with solvent dielectric constant 80, solute dielectric constant 2, ionic strength 0.145, Debye-Hückel boundary conditions, 65 grid points per axis). ..

Article Title: Differential biochemical properties of three canonical Dps proteins from the cyanobacterium Nostoc punctiforme suggest distinct cellular functions
Article Snippet: .. The electrostatic potentials of these protein models, as well as for EcDps were calculated using DelPhi ( 55 ), as implemented in Discovery Studio 2.1 (Accelrys), to solve the Poisson-Boltzmann equation on the protein system in a cubic lattice (implicit solvent model with solvent dielectric constant 80, solute dielectric constant 2, ionic strength 0.145, Debye-Hückel boundary conditions, 65 grid points per axis). ..



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