Review



caption a7 number species strain assembly method jspecies anib jspecies tetra kostas ani kostas aai conservative consensus 01 g vaginalis atcc 14018  (ATCC)


Bioz Verified Symbol ATCC is a verified supplier
Bioz Manufacturer Symbol ATCC manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 97

    Structured Review

    ATCC caption a7 number species strain assembly method jspecies anib jspecies tetra kostas ani kostas aai conservative consensus 01 g vaginalis atcc 14018
    Summary of in silico taxonomic findings for the 14 representative genomospecies from Fig. 1 . a
    Caption A7 Number Species Strain Assembly Method Jspecies Anib Jspecies Tetra Kostas Ani Kostas Aai Conservative Consensus 01 G Vaginalis Atcc 14018, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 249 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/caption+a7+number/Gardnerella+vaginalis%3B+594/pmc07055668-168-26-41
    Average 97 stars, based on 249 article reviews
    caption a7 number species strain assembly method jspecies anib jspecies tetra kostas ani kostas aai conservative consensus 01 g vaginalis atcc 14018 - by Bioz Stars, 2026-09
    97/100 stars

    Images

    1) Product Images from "In Silico Analysis of Gardnerella Genomospecies Detected in the Setting of Bacterial Vaginosis"

    Article Title: In Silico Analysis of Gardnerella Genomospecies Detected in the Setting of Bacterial Vaginosis

    Journal: Clinical Chemistry

    doi: 10.1373/clinchem.2019.305474

    Summary of in silico taxonomic findings for the 14 representative genomospecies from Fig. 1 . a
    Figure Legend Snippet: Summary of in silico taxonomic findings for the 14 representative genomospecies from Fig. 1 . a

    Techniques Used: In Silico

    Related Articles

    Transduction:

    Article Title: Bifidobacterium bifidum ATCC 15696 and Bifidobacterium breve 24b Metabolic Interaction Based on 2′- O -Fucosyl-Lactose Studied in Steady-State Cultures in a Freter-Style Chemostat
    Article Snippet: .. Downregulated genes related mainly to the COGs “amino acid transport and metabolism” (E), “signal transduction mechanisms” (T), “nucleotide transport and metabolism” (N), and “defense mechanisms” (V). fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 6 caption a7 Number of B. bifidum ATCC 15696 differentially expressed genes grouped according to functional annotation category (Clusters of Orthologous Groups [COGs] of proteins categories). ..

    Functional Assay:

    Article Title: Bifidobacterium bifidum ATCC 15696 and Bifidobacterium breve 24b Metabolic Interaction Based on 2′- O -Fucosyl-Lactose Studied in Steady-State Cultures in a Freter-Style Chemostat
    Article Snippet: .. Downregulated genes related mainly to the COGs “amino acid transport and metabolism” (E), “signal transduction mechanisms” (T), “nucleotide transport and metabolism” (N), and “defense mechanisms” (V). fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 6 caption a7 Number of B. bifidum ATCC 15696 differentially expressed genes grouped according to functional annotation category (Clusters of Orthologous Groups [COGs] of proteins categories). ..

    Article Title: Genome of Bacillus sp. strain QHF158 provides insights into its parasporal inclusions encoded by the S-layer gene
    Article Snippet: .. Furthermore, 66.57% of genes (3816) were represented by COG functional categories (Fig. ). table ft1 table-wrap mode="anchored" t5 Table 1 caption a7 Features Value Genome size (bp) 5,331,682 DNA scaffolds 66 DNA G + C content (%) 35.46 DNA coding (bp) 4,438,413 Scaffold N50 length 409,130 Total genes 5732 Protein-coding genes 5657 RNA genes 75 Genes in internal clusters 120 Genes with function prediction 4239 Genes assigned to COGs 3816 Genes with Pfam domains 3186 Genes with signal peptides 236 Genes with transmembrane helices 1632 CRISPR repeats Open in a separate window The total is based on either the size of the genome in base pairs or the total number of protein-coding genes in the annotated genome Genome properties and statistics of strain of QHF158 fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window Fig. 1 caption a7 Number of genes associated with general COG functional categories Phylogenetic relationship analysis BLAST search against the GenBank database showed that the 16S rRNA gene sequence of strain QHF158 was 99% identical to more than 20 sequences of members of genus Bacillus such as B. mycoides strain ATCC 6462, B. wiedmannii strain FSL W8-0169 T , and B. cereus ATCC 14579. .. The phylogenetic tree was constructed using 16S rDNA sequences retrieved from GenBank, which indicated Bacillus sp. strain QHF158 is most closely related to B. mycoides strain ATCC 6462 instead of B. thuringiensis (SI Fig. ).

    other:

    Article Title: Benchmarking Metagenomics Tools for Taxonomic Classification
    Article Snippet: These characteristics can be used to make an informed decision about the appropriate abundance level cut-off for post-filtering of classifications. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window Figure 6. caption a7 Number of species classified versus minimum abundance threshold detected in ATCC Even sample datasets.

    Article Title: New Insight into Daptomycin Bioavailability and Localization in Staphylococcus aureus Biofilms by Dynamic Fluorescence Imaging
    Article Snippet: As presented in , daptomycin dramatically prevented the emergence of rifampin-resistant mutants when the combination of daptomycin and rifampin was used. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 6 caption a7 Number of rifampin-resistant mutants determined in MSSA ATCC 27217 biofilms counted on rifampin-containing TSA plates.

    Concentration Assay:

    Article Title: Replicate PCR Testing and Probit Analysis for Detection and Quantitation of Chlamydia pneumoniae in Clinical Specimens
    Article Snippet: .. At a concentration of 1 IFU/ml, the non-nested PCR detected 5 of 10 versus 8 of 10 for the nested PCR; and at a concentration of 0.1 IFU/ml, the non-nested PCR detected 0 of 10 versus 1 of 10 for the nested PCR. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG. 1 caption a7 Number of positives per 10 replicates versus the concentration of C. pneumoniae ATCC VR-1310 for non-nested PCR (A) and nested PCR (B) and a regression curve determined by probit regression analysis (SPSS). .. The SPSS statistical program generated the probit (predicted proportion positive) versus the C. pneumoniae concentration with 95% confidence intervals (CI) shown in Table .

    Polymerase Chain Reaction:

    Article Title: Replicate PCR Testing and Probit Analysis for Detection and Quantitation of Chlamydia pneumoniae in Clinical Specimens
    Article Snippet: .. At a concentration of 1 IFU/ml, the non-nested PCR detected 5 of 10 versus 8 of 10 for the nested PCR; and at a concentration of 0.1 IFU/ml, the non-nested PCR detected 0 of 10 versus 1 of 10 for the nested PCR. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG. 1 caption a7 Number of positives per 10 replicates versus the concentration of C. pneumoniae ATCC VR-1310 for non-nested PCR (A) and nested PCR (B) and a regression curve determined by probit regression analysis (SPSS). .. The SPSS statistical program generated the probit (predicted proportion positive) versus the C. pneumoniae concentration with 95% confidence intervals (CI) shown in Table .

    Nested PCR:

    Article Title: Replicate PCR Testing and Probit Analysis for Detection and Quantitation of Chlamydia pneumoniae in Clinical Specimens
    Article Snippet: .. At a concentration of 1 IFU/ml, the non-nested PCR detected 5 of 10 versus 8 of 10 for the nested PCR; and at a concentration of 0.1 IFU/ml, the non-nested PCR detected 0 of 10 versus 1 of 10 for the nested PCR. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG. 1 caption a7 Number of positives per 10 replicates versus the concentration of C. pneumoniae ATCC VR-1310 for non-nested PCR (A) and nested PCR (B) and a regression curve determined by probit regression analysis (SPSS). .. The SPSS statistical program generated the probit (predicted proportion positive) versus the C. pneumoniae concentration with 95% confidence intervals (CI) shown in Table .

    CRISPR:

    Article Title: Genome of Bacillus sp. strain QHF158 provides insights into its parasporal inclusions encoded by the S-layer gene
    Article Snippet: .. Furthermore, 66.57% of genes (3816) were represented by COG functional categories (Fig. ). table ft1 table-wrap mode="anchored" t5 Table 1 caption a7 Features Value Genome size (bp) 5,331,682 DNA scaffolds 66 DNA G + C content (%) 35.46 DNA coding (bp) 4,438,413 Scaffold N50 length 409,130 Total genes 5732 Protein-coding genes 5657 RNA genes 75 Genes in internal clusters 120 Genes with function prediction 4239 Genes assigned to COGs 3816 Genes with Pfam domains 3186 Genes with signal peptides 236 Genes with transmembrane helices 1632 CRISPR repeats Open in a separate window The total is based on either the size of the genome in base pairs or the total number of protein-coding genes in the annotated genome Genome properties and statistics of strain of QHF158 fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window Fig. 1 caption a7 Number of genes associated with general COG functional categories Phylogenetic relationship analysis BLAST search against the GenBank database showed that the 16S rRNA gene sequence of strain QHF158 was 99% identical to more than 20 sequences of members of genus Bacillus such as B. mycoides strain ATCC 6462, B. wiedmannii strain FSL W8-0169 T , and B. cereus ATCC 14579. .. The phylogenetic tree was constructed using 16S rDNA sequences retrieved from GenBank, which indicated Bacillus sp. strain QHF158 is most closely related to B. mycoides strain ATCC 6462 instead of B. thuringiensis (SI Fig. ).

    Sequencing:

    Article Title: Genome of Bacillus sp. strain QHF158 provides insights into its parasporal inclusions encoded by the S-layer gene
    Article Snippet: .. Furthermore, 66.57% of genes (3816) were represented by COG functional categories (Fig. ). table ft1 table-wrap mode="anchored" t5 Table 1 caption a7 Features Value Genome size (bp) 5,331,682 DNA scaffolds 66 DNA G + C content (%) 35.46 DNA coding (bp) 4,438,413 Scaffold N50 length 409,130 Total genes 5732 Protein-coding genes 5657 RNA genes 75 Genes in internal clusters 120 Genes with function prediction 4239 Genes assigned to COGs 3816 Genes with Pfam domains 3186 Genes with signal peptides 236 Genes with transmembrane helices 1632 CRISPR repeats Open in a separate window The total is based on either the size of the genome in base pairs or the total number of protein-coding genes in the annotated genome Genome properties and statistics of strain of QHF158 fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window Fig. 1 caption a7 Number of genes associated with general COG functional categories Phylogenetic relationship analysis BLAST search against the GenBank database showed that the 16S rRNA gene sequence of strain QHF158 was 99% identical to more than 20 sequences of members of genus Bacillus such as B. mycoides strain ATCC 6462, B. wiedmannii strain FSL W8-0169 T , and B. cereus ATCC 14579. .. The phylogenetic tree was constructed using 16S rDNA sequences retrieved from GenBank, which indicated Bacillus sp. strain QHF158 is most closely related to B. mycoides strain ATCC 6462 instead of B. thuringiensis (SI Fig. ).



    Similar Products

    97
    ATCC caption a7 number species strain assembly method jspecies anib jspecies tetra kostas ani kostas aai conservative consensus 01 g vaginalis atcc 14018
    Summary of in silico taxonomic findings for the 14 representative genomospecies from Fig. 1 . a
    Caption A7 Number Species Strain Assembly Method Jspecies Anib Jspecies Tetra Kostas Ani Kostas Aai Conservative Consensus 01 G Vaginalis Atcc 14018, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/caption+a7+number/Gardnerella+vaginalis%3B+594/pmc07055668-168-26-41
    Average 97 stars, based on 1 article reviews
    caption a7 number species strain assembly method jspecies anib jspecies tetra kostas ani kostas aai conservative consensus 01 g vaginalis atcc 14018 - by Bioz Stars, 2026-09
    97/100 stars
      Buy from Supplier

    96
    ATCC caption a7 g vaginalis isolates assembly size number
    MIC values of CAms (µM) against <t> G. vaginalis </t> and other vaginal pathogens in comparison to healthy Lactobacillus species.
    Caption A7 G Vaginalis Isolates Assembly Size Number, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/caption+a7+number/A7/pmc07076263-326-22-40
    Average 96 stars, based on 1 article reviews
    caption a7 g vaginalis isolates assembly size number - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    96
    ATCC caption a7 number
    MIC values of CAms (µM) against <t> G. vaginalis </t> and other vaginal pathogens in comparison to healthy Lactobacillus species.
    Caption A7 Number, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/caption+a7+number/A7/pmc07455649-97-140-188
    Average 96 stars, based on 1 article reviews
    caption a7 number - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    96
    ATCC caption a7 protein id ec number
    MIC values of CAms (µM) against <t> G. vaginalis </t> and other vaginal pathogens in comparison to healthy Lactobacillus species.
    Caption A7 Protein Id Ec Number, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/caption+a7+number/A7/pmc06954919-139-42-66
    Average 96 stars, based on 1 article reviews
    caption a7 protein id ec number - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    Image Search Results


    Summary of in silico taxonomic findings for the 14 representative genomospecies from Fig. 1 . a

    Journal: Clinical Chemistry

    Article Title: In Silico Analysis of Gardnerella Genomospecies Detected in the Setting of Bacterial Vaginosis

    doi: 10.1373/clinchem.2019.305474

    Figure Lengend Snippet: Summary of in silico taxonomic findings for the 14 representative genomospecies from Fig. 1 . a

    Article Snippet: The AAI calculator was the only tool that considered GED7760B the same genomospecies as G. piotii UGENT 18.01 (T)/JCP8017A. table ft1 table-wrap mode="anchored" t5 Table 1. caption a7 Number Species/strain Assembly Method Jspecies-ANIb Jspecies-Tetra Kostas-ANI Kostas-AAI Conservative consensus 01 G. vaginalis ATCC 14018 (T) GCA_000178355.1 01 01 = 02 01 01 = 02 GS01 (01 = 02) 02 JCP8108 GCA_000414525.1 02 02 03 JCP8017A GCA_000414605.1 03 03 = 04 03 03 = 04 = 11 GS02 (03 = 04) 04 G. piotii UGENT 18.01 (T) GCA_003397585.1 04 04 05 G. leopoldii UGENT 06.41 (T) GCA_003293675.1 05 05 = 06 05 = 06 05 = 06 GS03 (05 = 06) 06 G. swidsinkii 9838–1 (T) GCA_003397705.1 06 07 JCP8481A GCA_000414465.1 07 07 07 07 GS04 (07) 08 UMB1686 GCA_002884775.1 08 08 = 09 = 10 08 08 = 09 = 10 GS05 (08 = 09 = 10) 09 6119V5 GCA_000263655.1 09 09 = 10 10 1500E GCA_000263595.1 10 11 GED7760B GCA_001546455.1 11 11 11 GS06 (11) 12 CMW7778B GCA_001563665.1 12 12 12 12 GS07 (12) 13 KA00225 GCA_002896555.1 13 13 13 13 GS08 (13) 14 NR010 GCA_003408845.1 14 14 14 14 GS09 (14) Number of species 14 9 12 8 9 Open in a separate window a The number corresponds to the depiction in .

    Techniques: In Silico

    MIC values of CAms (µM) against  G. vaginalis  and other vaginal pathogens in comparison to healthy Lactobacillus species.

    Journal: Pathogens and Disease

    Article Title: Cationic amphiphiles against Gardnerella vaginalis resistant strains and bacterial vaginosis-associated pathogens

    doi: 10.1093/femspd/ftz059

    Figure Lengend Snippet: MIC values of CAms (µM) against G. vaginalis and other vaginal pathogens in comparison to healthy Lactobacillus species.

    Article Snippet: Further details of the assemblies in comparison with published genomes are presented in Table . table ft1 table-wrap mode="anchored" t5 Table 5. caption a7 G. vaginalis isolates Assembly size Number of contigs Largest contig, nt G + C content, % ATCC 14018 a 1 657 111 14 550 404 41.3 14018c b 1 657 819 11 372 021 41.3 ATCC 14018 ref c 1 667 406 1 1 667 406 41.4 Open in a separate window Accession numbers: a TBA. b TBA. c AP012332.1 .

    Techniques: Comparison

    Characterization of draft genome sequences of  G. vaginalis  ATCC 14018 and 14018c.

    Journal: Pathogens and Disease

    Article Title: Cationic amphiphiles against Gardnerella vaginalis resistant strains and bacterial vaginosis-associated pathogens

    doi: 10.1093/femspd/ftz059

    Figure Lengend Snippet: Characterization of draft genome sequences of G. vaginalis ATCC 14018 and 14018c.

    Article Snippet: Further details of the assemblies in comparison with published genomes are presented in Table . table ft1 table-wrap mode="anchored" t5 Table 5. caption a7 G. vaginalis isolates Assembly size Number of contigs Largest contig, nt G + C content, % ATCC 14018 a 1 657 111 14 550 404 41.3 14018c b 1 657 819 11 372 021 41.3 ATCC 14018 ref c 1 667 406 1 1 667 406 41.4 Open in a separate window Accession numbers: a TBA. b TBA. c AP012332.1 .

    Techniques:

    MIC-B 90 values for CAm compounds against  G. vaginalis  species and strains.

    Journal: Pathogens and Disease

    Article Title: Cationic amphiphiles against Gardnerella vaginalis resistant strains and bacterial vaginosis-associated pathogens

    doi: 10.1093/femspd/ftz059

    Figure Lengend Snippet: MIC-B 90 values for CAm compounds against G. vaginalis species and strains.

    Article Snippet: Further details of the assemblies in comparison with published genomes are presented in Table . table ft1 table-wrap mode="anchored" t5 Table 5. caption a7 G. vaginalis isolates Assembly size Number of contigs Largest contig, nt G + C content, % ATCC 14018 a 1 657 111 14 550 404 41.3 14018c b 1 657 819 11 372 021 41.3 ATCC 14018 ref c 1 667 406 1 1 667 406 41.4 Open in a separate window Accession numbers: a TBA. b TBA. c AP012332.1 .

    Techniques:

    Minimum biofilm bactericidal concentrations (MBC-B) of CAms (µM) against  G. vaginalis  strains in comparison to Lactobacillus species.

    Journal: Pathogens and Disease

    Article Title: Cationic amphiphiles against Gardnerella vaginalis resistant strains and bacterial vaginosis-associated pathogens

    doi: 10.1093/femspd/ftz059

    Figure Lengend Snippet: Minimum biofilm bactericidal concentrations (MBC-B) of CAms (µM) against G. vaginalis strains in comparison to Lactobacillus species.

    Article Snippet: Further details of the assemblies in comparison with published genomes are presented in Table . table ft1 table-wrap mode="anchored" t5 Table 5. caption a7 G. vaginalis isolates Assembly size Number of contigs Largest contig, nt G + C content, % ATCC 14018 a 1 657 111 14 550 404 41.3 14018c b 1 657 819 11 372 021 41.3 ATCC 14018 ref c 1 667 406 1 1 667 406 41.4 Open in a separate window Accession numbers: a TBA. b TBA. c AP012332.1 .

    Techniques: Comparison

    FIC values of metronidazole and clindamycin together with CAms against planktonic cells of  G. vaginalis  14018.

    Journal: Pathogens and Disease

    Article Title: Cationic amphiphiles against Gardnerella vaginalis resistant strains and bacterial vaginosis-associated pathogens

    doi: 10.1093/femspd/ftz059

    Figure Lengend Snippet: FIC values of metronidazole and clindamycin together with CAms against planktonic cells of G. vaginalis 14018.

    Article Snippet: Further details of the assemblies in comparison with published genomes are presented in Table . table ft1 table-wrap mode="anchored" t5 Table 5. caption a7 G. vaginalis isolates Assembly size Number of contigs Largest contig, nt G + C content, % ATCC 14018 a 1 657 111 14 550 404 41.3 14018c b 1 657 819 11 372 021 41.3 ATCC 14018 ref c 1 667 406 1 1 667 406 41.4 Open in a separate window Accession numbers: a TBA. b TBA. c AP012332.1 .

    Techniques: